Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G01
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 60 3e-10
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.38
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.6
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 28 2.1
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 27 3.6
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.6
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.6
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 4.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.3
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Frame = +1
Query: 547 HVYDDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTACRC* 723
H++ DV+PA++ RS++ G ++YIYSSGSV AQKL F S AG+LL G++DT
Sbjct: 92 HLFPDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLK 149
Query: 724 T--GSY 735
T GSY
Sbjct: 150 TECGSY 155
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 194 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-EEDVKEAVNALRKLAIEDQEK 370
K LLLDIEGT SISFVKDKLFPYA + +++ ++ +E+++E + I ++
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62
Query: 371 SVEG 382
EG
Sbjct: 63 HAEG 66
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 260 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 376
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 188 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 367
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 368 KSV 376
+
Sbjct: 242 DEI 244
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 272 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 421
EN L Q+D+ E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 335 ALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQG 502
AL KL + +VT G A KED+ + ++ MS+ RKVA LK+L+G
Sbjct: 329 ALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEG 381
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 407 HPLQEW*PVLQHSSPD 360
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 249 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 94
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 544 GHVYDDVLPALEQWRSVEGQKIYI 615
G+VY+D + L++ + G KIYI
Sbjct: 121 GYVYEDTMKHLDKITEITGAKIYI 144
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 269 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 373
EEN + L A DEEDV+ A A ++ A+E E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,174
Number of Sequences: 5004
Number of extensions: 71483
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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