Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_G01
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 100 2e-21
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 84 1e-16
06_01_0608 - 4399252-4399894,4401640-4402427 33 0.40
03_06_0495 + 34323082-34323173,34323600-34323742,34324265-343243... 30 2.1
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 30 2.8
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 5.0
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773... 29 6.6
12_01_0468 + 3661177-3661626 28 8.7
05_05_0226 + 23442971-23443857,23444209-23446324 28 8.7
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 100 bits (239), Expect = 2e-21
Identities = 51/107 (47%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Frame = +2
Query: 185 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIED 361
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE + LR ED
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEED 332
Query: 362 QEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQG 502
+ + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG
Sbjct: 333 LKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQG 379
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 541 RGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDT 708
+G V+DDV AL+ W + G K+YIYSSGS +AQ+LLFG ++ GDL + G FDT
Sbjct: 392 QGVVFDDVPEALKHWHA-SGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDT 446
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 84.2 bits (199), Expect = 1e-16
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
Frame = +2
Query: 149 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQW-DEEDVKE 325
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + E+ +
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
Query: 326 AVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQL 496
V LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQL
Sbjct: 950 DVALLRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQL 1008
Query: 497 QG 502
QG
Sbjct: 1009 QG 1010
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/57 (50%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +1
Query: 541 RGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSA-GDLLPLIDGHFDT 708
R VYDD AL +WR+ K YIYSSGS +AQ+L+F ++A GDL + G FDT
Sbjct: 1023 RSEVYDDAADALRRWRA----KAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDT 1075
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 260 PYAEENVKDFLDAQWDEEDVKEAVNA---LRKLAIEDQEKSVEGLVT 391
PY E++++ LD + DEEDV+ + +A L K+ +E + L+T
Sbjct: 371 PYTEDDIRKILDIRCDEEDVEMSADAKVLLTKIGVETSLRYAIHLIT 417
>03_06_0495 +
34323082-34323173,34323600-34323742,34324265-34324315,
34324405-34324626,34324731-34324833,34325156-34325552,
34326564-34326735,34326995-34327089,34327246-34327455
Length = 494
Score = 30.3 bits (65), Expect = 2.1
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +2
Query: 137 GSVEMAKENT-----VIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQ 301
G +E+A++NT V+ D K VL IEG +T + D L + EE + +D+
Sbjct: 251 GLLELARDNTSGAGNVLPDQDKLKDVLKSRIEGISTMDA---DDLSAHREE--RQLVDSL 305
Query: 302 WDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKE 418
W KE N L +EK GLV +PGEDA ++
Sbjct: 306 W-----KECYNEPSSL----REK---GLVVLPGEDAPQQ 332
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 566 STSSYTCPLDVSLIITFFPDKPPGVASGGQ 477
STS++TC + ITF P G SGG+
Sbjct: 249 STSTFTCTAGTNYAITFCPSTTSGKYSGGE 278
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 170 IGDIVKKSKVLLLDIEGTT---TSISFVKDKLFPYAEE-NVKDFLD-AQWDEEDVKEAVN 334
+G++ + K+ L + T + D +FPY EE + + QW E + K +
Sbjct: 1034 LGELPRLKKLSLFGLSSITHINDQVYGTNDVIFPYLEELHFSELFSWEQWSEAEYKLLIP 1093
Query: 335 ALRKLAI 355
LRKL I
Sbjct: 1094 HLRKLGI 1100
>03_06_0344 -
33276366-33276548,33277044-33277169,33277254-33277322,
33277401-33277505,33277595-33277633,33277717-33278016,
33278093-33278182,33278271-33278312,33278433-33278516,
33278762-33278947,33279218-33279403,33279663-33280025
Length = 590
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +2
Query: 173 GDIVKKSKVLLLDIEGTTTSISFVKD--KLFPYAEENVKDFLDAQWDEEDVKEAVNALRK 346
G I ++ K L++D +F +D ++F N + L + E VKE K
Sbjct: 238 GFIYRRLKCLIIDEADRLLEQNFEEDMKQIFKRLPLNRQTVLFSATQTEQVKE----FAK 293
Query: 347 LAIEDQEKSVEGLVTIPGEDASKEDQIEGL 436
L+ E E+S V + +DA +EGL
Sbjct: 294 LSFEKNEESTSKPVYVGVDDAETNATVEGL 323
>12_01_0468 + 3661177-3661626
Length = 149
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 269 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKEDQ-IEGLVKN 445
EE V++ D + +EE V+E + + ++++E+ + V GE+ ++E Q +G+V++
Sbjct: 71 EEEVEEEEDIE-EEEVVEEEEEEIEEEEVKEEEEELREQVQEAGEEVNEEQQGADGVVQS 129
Query: 446 V 448
+
Sbjct: 130 M 130
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 599 VRRFTFTPLDPSKPRNFFLASHLLGTYFLSSMAISTLLVGAKQEATSL 742
++ FT P+D R+ L S FLSS+ + T G+K SL
Sbjct: 746 IQEFTKAPIDRDTDRSLSLDSEECPENFLSSLDLETCSEGSKYALRSL 793
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,469,973
Number of Sequences: 37544
Number of extensions: 486637
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -