Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_F24
(954 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 33 0.25
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.59
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 31 1.4
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 30 3.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.1
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 3.1
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 29 5.5
06_03_1150 + 28022633-28023374,28023501-28023565 29 5.5
05_06_0282 + 26915249-26915881 29 7.2
>07_01_0479 + 3606663-3607448
Length = 261
Score = 33.5 bits (73), Expect = 0.25
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = +2
Query: 719 GVXPXKWGGXPXXKXXFGXXXPKRXPXXXKRGXXWGGFXQRGXPPPXKXXKKXXPPXGGG 898
GV P GG P F P P + G G PPP PP G
Sbjct: 192 GVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMP-------GGPPPGMRPGMPPPPFRPG 244
Query: 899 GXPPPXVXKKPXGXPP 946
PPP ++P PP
Sbjct: 245 MPPPPPGPQQPGQNPP 260
Score = 28.3 bits (60), Expect = 9.5
Identities = 27/89 (30%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Frame = -2
Query: 920 KPXGGXXPPPQXGGXFFFXFXRGGGXP--FXKNPPXXXPFXGXXGPFLGXXXQKXFFXXG 747
+P G PPP F R G P F PP GPF+ G
Sbjct: 168 RPPPGQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPP------GPFMRGPPPM-----G 216
Query: 746 FPPIXWGXPLXPPXGXXEXPXPPPPXXXG 660
P + G P PP G PPPP G
Sbjct: 217 PPQVRPGMPGGPPPG-MRPGMPPPPFRPG 244
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 32.3 bits (70), Expect = 0.59
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPP 946
PPP K PP G PPP K G PP
Sbjct: 347 PPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379
Score = 31.5 bits (68), Expect = 1.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPP 946
PPP K PP G PPP K P PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
Score = 30.3 bits (65), Expect = 2.4
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGG--GXPPPXVXKKPXGXPP 946
PPP K PP GG G PPP K PP
Sbjct: 356 PPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 851 PPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPP 946
PP K PP G PPP K P PP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPPG 949
PPP K P G PPP P PPG
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPG 371
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 830 FXQRGXPPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPP 946
F +RG P P + PP GGGG P PP
Sbjct: 26 FDRRGGPNPNNSYHRRGPPGGGGGDRRGGFQLPPDAAPP 64
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXG--XPPG 949
PP PP GGGG PP V P PPG
Sbjct: 731 PPEYAPEPPPGPPGGGGGYLPPVVFPPPYASRGPPG 766
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 3.1
Identities = 23/76 (30%), Positives = 26/76 (34%)
Frame = -2
Query: 899 PPPQXGGXFFFXFXRGGGXPFXKNPPXXXPFXGXXGPFLGXXXQKXFFXXGFPPIXWGXP 720
PPPQ +G PF PP P GP + F G P P
Sbjct: 31 PPPQQPAYGHMPPPQGAPPPFLAPPPPPPP-----GP---PPPHQPQFNFGPGPPQQQQP 82
Query: 719 LXPPXGXXEXPXPPPP 672
PP + P PPPP
Sbjct: 83 PPPPQMYYQPPPPPPP 98
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPPG 949
PPP PP G PPP PPG
Sbjct: 648 PPPIAVAPPPAPPIAGAAPPPPMANGAAAAAPPG 681
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -3
Query: 913 GGGXXPPPXGGGXFFXXFXXXXXXPLXKTPPXXAPFXGXGXP 788
GGG PP G F F P +P P G G P
Sbjct: 88 GGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFP 129
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -3
Query: 913 GGGXXPPPXGGGXFFXXFXXXXXXPLXKTPPXXAPFXGXGXP 788
GGG PP G F F P +P P G G P
Sbjct: 88 GGGGAAPPSAGSGFRFPFPLPLPFPAPASPGGAPPSSGSGFP 129
>05_06_0282 + 26915249-26915881
Length = 210
Score = 28.7 bits (61), Expect = 7.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 848 PPPXKXXKKXXPPXGGGGXPPPXVXKKPXGXPPGN 952
PPP P GG G P P G PP N
Sbjct: 136 PPPPDPNTPVQPLSGGDGRPRQLAPPPPMGNPPPN 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,582,019
Number of Sequences: 37544
Number of extensions: 319388
Number of successful extensions: 1349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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