Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F23
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   293   3e-80
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.17 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    28   2.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   2.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   3.6  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.3  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    26   6.3  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    26   6.3  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   8.3  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   8.3  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  293 bits (718), Expect = 3e-80
 Identities = 138/225 (61%), Positives = 176/225 (78%), Gaps = 1/225 (0%)
 Frame = +2

Query: 194 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKANV 373
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 374 DYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGL 553
           DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H  +  EE+GAGDQG+
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124

Query: 554 MFGYATDETEECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVP 733
           MFGYATDET E +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY    GA +P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184

Query: 734 QRVHTVVVSLQHSEKIT*RLAR*D-QRKGHQRGFPAQYLDERTVF 865
           +RV T+VVS QH++ I+    R +   K  +   PA  LDE+TV+
Sbjct: 185 RRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVY 229


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 40/144 (27%), Positives = 65/144 (45%)
 Frame = -2

Query: 609 STTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPL 430
           S++ +    SVSS +       +P  TSSS+L S +  +      SS+S TL    S  L
Sbjct: 179 SSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSL 235

Query: 429 DESS*PICLTVSRTTF**STLALDVISPHKSTIPVLVMVSHATFASGS*FRCASRIASLI 250
             SS P   + S +T   S  +    S   S+     ++S ++ +S S    +S I+S  
Sbjct: 236 STSSIPSTSSSSSSTS-SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS-- 292

Query: 249 WSHILSG*PSPTDSDVNKNTDPSS 178
            S   S  P+ T S ++ ++  SS
Sbjct: 293 -SSSSSSSPTSTSSTISSSSSSSS 315


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +2

Query: 98  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDA 274
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L  
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESLRL 692

Query: 275 HLNQDPDAKVACETITKTGMVLLCGEITSKANV 373
                   K   E        L+ G+ TS+ ++
Sbjct: 693 RAE-----KTLVENALSENFTLMLGQSTSEESL 720


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 748 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 626
           S +SL D  TT ++IF+ NL   +W   P    +I P+  N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 783 PRDLRDEIREKVIKEVSLHNILM 851
           PRD+  +IRE V+K +S +N ++
Sbjct: 166 PRDIEKQIREMVLKYISKNNAII 188


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 244  RPNKRRYSRRAPESGSGRKSCM 309
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 687 VFESGLAHQ--NSPFRLSSAIF*LSLCASTTVNGMHSSVSSV 568
           +F  G A++  N+PF +S +++  S   +T ++G+H  V ++
Sbjct: 184 LFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTI 225


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 230 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 334
           P K  ++  D ++ + H N DPDAK+A   ++K  M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 466 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 341
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 362 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 481
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,943,269
Number of Sequences: 5004
Number of extensions: 87647
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)