Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F22
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.      54   2e-07
AC006708-14|AAT81172.1|  273|Caenorhabditis elegans Metaphase-to...    54   2e-07
AC006708-13|AAF60415.1|  788|Caenorhabditis elegans Metaphase-to...    54   2e-07
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    33   0.35 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    33   0.35 
Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical p...    29   3.3  

>AY081955-1|AAL92523.1|  788|Caenorhabditis elegans MAT-1 protein.
          Length = 788

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
 Frame = +3

Query: 165 VWDCLNNYEFENAIFLAERLYA--EVGSEEAAFLLGTCYYRSGRINEAHHLLQNKTLALP 338
           + + +  Y F++AIFLAE  Y   +  + E+  L   C YR+ +  E + LL +  L+  
Sbjct: 33  IHEMMKCYAFDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGA 92

Query: 339 QARFLLAKCSADLKSYKDAEIALGSNLD-IIASEFGEQ---APYALQLLAKVYISTGRRN 506
           +  +LLA+ S DL    D   AL  + D +I  +  E+   A +A  L A++       +
Sbjct: 93  RLFYLLARVSYDLNKIDDCRGALFEHDDGVIRKDILEEPRVASHANLLHAQMLCDESYMD 152

Query: 507 EAAEAHRKALSLNPFMWKSFAQLCNMG 587
            A E+ +K+L  N  +W +       G
Sbjct: 153 LALESCQKSLDENILLWSAIITYLRFG 179


>AC006708-14|AAT81172.1|  273|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform b protein.
          Length = 273

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
 Frame = +3

Query: 165 VWDCLNNYEFENAIFLAERLYA--EVGSEEAAFLLGTCYYRSGRINEAHHLLQNKTLALP 338
           + + +  Y F++AIFLAE  Y   +  + E+  L   C YR+ +  E + LL +  L+  
Sbjct: 33  IHEMMKCYAFDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGA 92

Query: 339 QARFLLAKCSADLKSYKDAEIALGSNLD-IIASEFGEQ---APYALQLLAKVYISTGRRN 506
           +  +LLA+ S DL    D   AL  + D +I  +  E+   A +A  L A++       +
Sbjct: 93  RLFYLLARVSYDLNKIDDCRGALFEHDDGVIRKDILEEPRVASHANLLHAQMLCDESYMD 152

Query: 507 EAAEAHRKALSLNPFMWKSFAQLCNMG 587
            A E+ +K+L  N  +W +       G
Sbjct: 153 LALESCQKSLDENILLWSAIITYLRFG 179


>AC006708-13|AAF60415.1|  788|Caenorhabditis elegans
           Metaphase-to-anaphase transitiondefect protein 1,
           isoform a protein.
          Length = 788

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)
 Frame = +3

Query: 165 VWDCLNNYEFENAIFLAERLYA--EVGSEEAAFLLGTCYYRSGRINEAHHLLQNKTLALP 338
           + + +  Y F++AIFLAE  Y   +  + E+  L   C YR+ +  E + LL +  L+  
Sbjct: 33  IHEMMKCYAFDDAIFLAELHYETDKSNNSESLLLYADCLYRANKKEECYGLLSSVKLSGA 92

Query: 339 QARFLLAKCSADLKSYKDAEIALGSNLD-IIASEFGEQ---APYALQLLAKVYISTGRRN 506
           +  +LLA+ S DL    D   AL  + D +I  +  E+   A +A  L A++       +
Sbjct: 93  RLFYLLARVSYDLNKIDDCRGALFEHDDGVIRKDILEEPRVASHANLLHAQMLCDESYMD 152

Query: 507 EAAEAHRKALSLNPFMWKSFAQLCNMG 587
            A E+ +K+L  N  +W +       G
Sbjct: 153 LALESCQKSLDENILLWSAIITYLRFG 179


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 475  PKYTSA--QEEGMKPLKPIGKHYLLTHLCGNHLHS 573
            PK+ ++  +  G+KP K  G HY   H  G HLHS
Sbjct: 1175 PKHNASTLRSPGVKPPKAAGNHYSANHPIGLHLHS 1209


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 475  PKYTSA--QEEGMKPLKPIGKHYLLTHLCGNHLHS 573
            PK+ ++  +  G+KP K  G HY   H  G HLHS
Sbjct: 1175 PKHNASTLRSPGVKPPKAAGNHYSANHPIGLHLHS 1209


>Z22179-14|CAI06052.1|  443|Caenorhabditis elegans Hypothetical
           protein F58A4.14 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +3

Query: 246 EAAFLLGTCYYRSGRINEAHHLLQNKTLALPQARFLLAKCSADLKSYKDAEIALGSNLDI 425
           E   LLG  Y R+G++ E    L N     P     +    + ++++ D ++AL  N   
Sbjct: 234 EVMNLLGLIYLRTGQVQEGFVQLGNCLAYDPANSQAILTIGSIMQNHSDHDVAL--NKYR 291

Query: 426 IASEFGEQAPYALQLLAKVYISTGRRNEAAEAH---RKALSLNPFMWK 560
           +A++  +   Y   L   + I    RN+ A +H   +KA  +NP  +K
Sbjct: 292 VAADVSD---YNGCLWNNIGIGLLARNKPAASHSALKKAAFINPLNYK 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,210,297
Number of Sequences: 27780
Number of extensions: 439130
Number of successful extensions: 1079
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)