Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F22
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.92 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   3.7  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 375 LKSYKDAEIALGSNLDIIASEFGEQAPYALQLLAKVY 485
           ++  +DA    GSN   + + FG Q  Y   ++ KV+
Sbjct: 262 MRGKRDAAGIYGSNSSTVGTIFGYQGTYVNLVIVKVF 298


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 739 PNNVAHVHPWLCRQV 783
           PN+ +H HPW  + V
Sbjct: 122 PNHSSHEHPWFKKSV 136


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 665 SQHSENISFVNCNIHNNSSMNTNVXLIMLHTYTHGYVDK 781
           S  S N  + N N +NN++ N N     L  Y   Y+++
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNN-NYKKLQYYNINYIEQ 120


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 665 SQHSENISFVNCNIHNNSSMNTNVXLIMLHTYTHGYVDK 781
           S  S N  + N N +NN++ N N     L  Y   Y+++
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNN-NYKKLQYYNINYIEQ 120


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 665 SQHSENISFVNCNIHNNSSMNTNVXLIMLHTYTHGYVDK 781
           S  S N  + N N +NN++ N N     L  Y   Y+++
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNN-NYKKLQYYNINYIEQ 120


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 665 SQHSENISFVNCNIHNNSSMNTNVXLIMLHTYTHGYVDK 781
           S  S N  + N N +NN++ N N     L  Y   Y+++
Sbjct: 83  SSLSNNYKYSNYNNYNNNNYNNN-NYKKLQYYNINYIEQ 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,809
Number of Sequences: 438
Number of extensions: 5172
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)