Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F20
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    32   0.12 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.7  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    27   3.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    26   8.1  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +1

Query: 370 DKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCPEPTYPT 549
           D H++R   R++E+E       NGK   R  G P  + SGN A   S      P   YPT
Sbjct: 3   DSHSSR---RKYEKEKLVFATNNGK---RTEGTPAFLKSGNTASSSSPTLQFRPTSRYPT 56

Query: 550 AGGGP 564
               P
Sbjct: 57  LSHEP 61


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
 Frame = -2

Query: 698  DGNADHPPC--WCGSPAPCVFARIHRRPGW-PRTAWRWRSRDAPRTSRGPPPAVGYVGSG 528
            +GN D   C  W    A   F R H   G  P+  +RW S      SR    A+    S 
Sbjct: 706  NGNTDEELCARWMALGAFLPFYRNHNSLGSIPQEPFRWAS--VAEASRS---AIEIRYSL 760

Query: 527  QPLRTQLLLFA*FPLATVCGTPRTRPYIFPFPLSFDAFSSSKRLKSFLAACLS 369
             P    L+       A+V GTP  RP  F FP      S  K+     A  +S
Sbjct: 761  LPYWYTLM-----HTASVDGTPMVRPLFFEFPKQISLASVDKQFMIGTALLIS 808


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 708 QLSQAKLIAEESDKKYEEVARKLVXYGAGPKEGGG 812
           +LSQ     E+  KKYE+  +KL+  G   +EGGG
Sbjct: 250 RLSQDAQEEEKQKKKYEQHIKKLLD-GESNEEGGG 283


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 650 KALENRTNMEDDRRCHLGGSTVTGEAHRRGVGQEIRRGGAQACSLWSRT*RGRRNAPNKA 829
           +A+E    +E++ R   GG+ V G +           G   A     +  RG R  P+K 
Sbjct: 20  EAMELEDQLEEEER---GGNVVVGSSSANANASTAETGKKSAGGSKPKRRRGERIPPSKR 76

Query: 830 IAKXV 844
           I K +
Sbjct: 77  IRKAI 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,205
Number of Sequences: 5004
Number of extensions: 55414
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)