Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F20
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535     31   0.92 
01_04_0051 + 15430980-15431591                                         29   4.9  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    29   6.5  
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122...    29   6.5  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    28   8.6  
07_01_1097 - 10068431-10068655,10068797-10068880,10068945-100692...    28   8.6  
03_02_0389 - 8036575-8036841,8037011-8037133,8037516-8037736,803...    28   8.6  

>06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535
          Length = 145

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +1

Query: 502 RRS*VRSGCPEPTYPTAGGGPREVRGASRDRHRQAVRGQP-GRR*IRANTQGAGEPHQHG 678
           RR  V   C E   P   G  R   G  R   R A  G+  GRR  RA  + AG P   G
Sbjct: 35  RRLAVSPRCREVASPGGEGARRGGVGVGRGGERAASGGEEQGRRRRRAGNEVAGRPEGRG 94

Query: 679 G 681
           G
Sbjct: 95  G 95


>01_04_0051 + 15430980-15431591
          Length = 203

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 553 GGGPREVRGASRDRHRQAVRGQP 621
           GG P  V+ A RD HR+A+R +P
Sbjct: 93  GGAPAWVQDARRDAHRRALRRRP 115


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 25/103 (24%), Positives = 41/103 (39%)
 Frame = +1

Query: 352 KVNQNDDKHAARNDFRRFEEENASNERGNGKI*GRVRGVPQTVASGNYAKRRS*VRSGCP 531
           + +Q   K     +    EEE+   E G+G+        P+ + S   A        G P
Sbjct: 590 ETSQQRAKEEGEEEHDEGEEEHEEGEEGDGQSDEEEEEQPEEIGSSQLA--------GAP 641

Query: 532 EPTYPTAGGGPREVRGASRDRHRQAVRGQPGRR*IRANTQGAG 660
           +P+ P+ G   R  +    DR+   +   P R  +R  T+G G
Sbjct: 642 QPSQPSQGRPQR--KRVPVDRY--CLTSAPNRMALRLYTEGNG 680


>03_06_0335 +
           33211705-33211800,33211886-33211982,33212078-33212204,
           33212953-33213138,33213702-33213789,33214028-33214084,
           33214171-33214260,33214339-33214461,33215024-33215098,
           33215169-33215228,33215464-33215580,33215854-33216093,
           33216181-33216246,33216370-33216459,33216914-33217003,
           33217309-33217398,33217702-33217770,33217841-33217921,
           33218108-33218215,33218336-33218439,33218822-33218935,
           33219018-33219231
          Length = 793

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -1

Query: 237 SARTQPANKMAATELGRYKNIVTALITGNYVSLISPNEPALTIIINXFLMQLRFSTTTHX 58
           S  T+    + +  L +Y NIVTAL   NY  ++   + + T ++   ++Q     TT  
Sbjct: 388 SRATKQIVALLSAPLEKYSNIVTALELSNYPRVMDYLDNSTTKVMALVIIQSIMKNTTCI 447

Query: 57  SKXQSIK 37
           S    I+
Sbjct: 448 STSDKIE 454


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 161 ISAVTIFL*RPSSVAAILFAGCVRAEPISTIRNSNDERGCQLAFSRVGRRC 313
           I ++T+F     S+AA++ +  +RA  I  + N+N+ +  +    RVG  C
Sbjct: 535 IRSLTVFNEPSESIAALICSSKLRAVRILDLSNANEFKITRRDIERVGELC 585


>07_01_1097 -
           10068431-10068655,10068797-10068880,10068945-10069292,
           10069477-10069510,10069617-10070230,10079179-10079553,
           10079599-10079853,10079983-10080300
          Length = 750

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 RGCQLAFSRVGRRCLCLLAFKHSILTQK*IKMTTN 376
           R C L FS+   RCL    F H+   Q  +KM+ N
Sbjct: 123 RACALDFSKDWERCLPYAEFSHNNSFQASLKMSPN 157


>03_02_0389 -
           8036575-8036841,8037011-8037133,8037516-8037736,
           8037788-8037812,8038344-8038445,8038556-8038951,
           8039647-8039699,8039813-8039897,8040220-8040370,
           8040457-8040464
          Length = 476

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 660 RTAPTWRMIGVA--ILEAQLSQAKLIAEESDKKYEEVAR 770
           ++  TW  +G+A  +LE QL     +AE+  + YE V R
Sbjct: 300 KSKETWSKLGIANSVLENQLRNLNKLAEDHWEAYESVLR 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,356
Number of Sequences: 37544
Number of extensions: 480109
Number of successful extensions: 1622
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)