Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F20
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    26   0.40 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.7  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -1

Query: 372 VVILIHFCVKIECLNANKQRHLRPTRENAN*QPRSSLLF-RIVEMGSARTQ 223
           ++++++   +I C+ A++ R+L  T E+ N +PR ++L  R   + + RT+
Sbjct: 211 MLVMLYVYGRISCVIASRHRNLEAT-ESENVRPRRNVLIERAKSIRARRTE 260


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 234 ARTQPANKMAATELGRYKNIVTALITGNYVSLI 136
           A T PA   A   LG Y N +  ++  + VS I
Sbjct: 281 AETMPATSDAVPLLGTYFNCIMFMVASSVVSTI 313


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 467 YHKRLQVEIMRRE 505
           YHK LQ+E++R E
Sbjct: 156 YHKELQIELVREE 168


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = +3

Query: 717 QAKLIAEESDKKYEEVARKLV 779
           +A L+ +E +++YE++ RK++
Sbjct: 41  EAWLVQQEREQEYEKLKRKMI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,455
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)