Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F15
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.70 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.92 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   2.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   5.7  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 468 PXXPRXXPGXEAXEPPPXPPPXPAXWXG 385
           P  P   PG     PPP PPP PA   G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 480 PXSRPXXPRXXPGXEAXEPPPXPPP 406
           P SRP  P   P   A  PPP PPP
Sbjct: 237 PSSRP--PERVPSLSAPAPPPIPPP 259



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -2

Query: 480 PXSRPXXPRXXPGXEAXEPPPXPPPXPAXWXGSI 379
           P   P  P   P   A  PPP P P PA    SI
Sbjct: 460 PAGMPAAPPLPPAAPA--PPPAPAPAPAAPVASI 491


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 480 PXSRPXXPRXXPGXEAXEPPPXPPP 406
           P   P  P   PG E    PP PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect(2) = 2.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 426 PPPXPPPXPA 397
           PPP PPP PA
Sbjct: 189 PPPPPPPPPA 198



 Score = 21.4 bits (43), Expect(2) = 2.1
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = -2

Query: 480 PXSRPXXPRXXPGXEAXEPPPXPPP 406
           P S        P      PPP PPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 5.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 426 PPPXPPPXP 400
           PPP PPP P
Sbjct: 945 PPPPPPPPP 953



 Score = 21.4 bits (43), Expect(2) = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 435 AXEPPPXPPP 406
           A  PPP PPP
Sbjct: 943 AFPPPPPPPP 952


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 480 PXSRPXXPRXXPGXEAXEPPPXPPPXPA 397
           P SRP      P  E   P P P P P+
Sbjct: 261 PFSRPILEFDDPSPETVHPEPEPIPTPS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,303
Number of Sequences: 5004
Number of extensions: 11523
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)