Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F14
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    29   1.1  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   2.5  

>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
 Frame = +3

Query: 417 TCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNS----NINYLEIDLFKTFPRLS 584
           T D EHL          K  K      G L+DT     +     +    +D+++   RL 
Sbjct: 209 TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKALVKAIESGQVGGCAMDVYEGERRLF 268

Query: 585 YIDLSGNVIKKTGNGLFAQFGRLI 656
           Y DLS  VIK T     A F  ++
Sbjct: 269 YRDLSNEVIKDTTFQQLANFPNVL 292


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +3

Query: 519 IWTNSNINYLEIDLFKTFPRLSYIDLSGNVIKKTGNGLFAQFGRLIT*TFPGT 677
           +W    + +  + +F  F    ++   GN+I   G+ LF  +G ++   F  T
Sbjct: 129 LWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHT 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,350
Number of Sequences: 5004
Number of extensions: 54150
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)