Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F14
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1372 + 33008740-33009130,33009485-33011544                       29   4.7  
02_02_0190 - 7630282-7630287,7630383-7630547,7630641-7630691,763...    29   4.7  
08_02_1626 - 28341132-28341556,28341927-28342196,28342315-283427...    29   6.2  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    28   8.2  
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    28   8.2  
01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489...    28   8.2  

>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +3

Query: 408 DTCTCDDEHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSY 587
           D C C  E + CSN + + + L  + L     +LD +     +    +  +F +FP L +
Sbjct: 61  DDC-CLWERVNCSNITGRVSHLYFSNLYDSNEVLDAL---GHSFWRFDTTVFSSFPELQF 116

Query: 588 IDLSGN 605
           +DLS N
Sbjct: 117 LDLSMN 122


>02_02_0190 -
           7630282-7630287,7630383-7630547,7630641-7630691,
           7630955-7631128,7631882-7632116,7632224-7632306,
           7633826-7633866,7633986-7634067
          Length = 278

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 507 LDTIIWTNSNI-NYLEIDLFKTFPRLSYIDLSGNVIKK 617
           L T++ TN+ + N  EID   + P+L ++ L  N + K
Sbjct: 84  LHTLVLTNNRLTNLAEIDPLASLPKLQFLSLLDNTVTK 121


>08_02_1626 -
           28341132-28341556,28341927-28342196,28342315-28342726,
           28342840-28343127,28343833-28343941,28344028-28344230
          Length = 568

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 683 LVGSWKCSSNQSTELREQAVSSLLDNVSAQ-IDVRQSWKCFEQIN-FE-VVNIRV 528
           L  SW   SNQ  E  EQ ++SLL    A+ +D  Q +K  E ++ FE + N RV
Sbjct: 310 LRNSWNMLSNQYMEEYEQCIASLLPPEEARSLDYDQLYKGLEVLSQFEKLANSRV 364


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 683 LVGSWKCSSNQSTELREQAVSSLLDNVSAQIDVRQSWK 570
           ++G W C   Q+      AV  +  NV A I  RQSWK
Sbjct: 419 VIGLWCCRCKQAARALAMAVV-VATNVEATIWQRQSWK 455


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 429 EHLTCSNTSVQDNKLTKTTLAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNV 608
           E L  +N ++     T+  +   GNL +  +  N     +   LF + P +  +DLSGN+
Sbjct: 271 EVLNLNNNNMNGTLPTEQAIENLGNLRELHLSLNRFAGNIPRSLF-SLPHIELLDLSGNL 329

Query: 609 IK 614
           ++
Sbjct: 330 LE 331


>01_05_0611 -
           23644692-23646439,23647011-23647551,23648851-23648952,
           23649244-23649441
          Length = 862

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 486 LAKYGNLLDTIIWTNSNINYLEIDLFKTFPRLSYIDLSGNVIK 614
           +  +GNL    +  NS    L    F T  RL ++DLS N +K
Sbjct: 335 IGAFGNLTSLNLGQNSFSGVLAEYHFATLERLEFLDLSSNSLK 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,595
Number of Sequences: 37544
Number of extensions: 321525
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)