Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_F12
(904 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 81 2e-16
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 50 5e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 48 2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 1e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 45 2e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 44 4e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 42 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 40 5e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 8e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 39 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 0.002
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.006
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.006
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.008
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.010
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.010
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.010
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 35 0.018
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.042
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 33 0.042
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.073
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 33 0.073
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.17
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.22
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.22
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.39
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.39
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.52
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 2.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 4.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.4
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.4
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 8.4
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/93 (38%), Positives = 57/93 (61%)
Frame = +1
Query: 40 DLRK*TQRRLKHDMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 219
D ++ R + + FVGG+ + +++E RNFF++FG +L+ + DK + +GF F
Sbjct: 233 DPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGF 292
Query: 220 ITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 318
+T+E+E V + P TI GK V+VKRATPK
Sbjct: 293 VTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 70.1 bits (164), Expect = 4e-13
Identities = 29/81 (35%), Positives = 55/81 (67%)
Frame = +1
Query: 82 GRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 261
G+ F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM- 221
Query: 262 TPKRTIGGKEVDVKRATPKPD 324
+ + + GK +D KRA P+ +
Sbjct: 222 SKEHHLDGKIIDPKRAIPREE 242
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 50.0 bits (114), Expect = 5e-07
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK----GFCFITFESEQVVND 252
R FVG LS+ EIR+ F GT+ +V +PF + + + G F+TF +++ V+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 253 LLKTPK-RTIGGKEVDVKRATP 315
++T +T+ +E+ V++A P
Sbjct: 105 AIETLNGKTLDDREIVVQKARP 126
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 261
R F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 262 TPKRTIGGKEVDV 300
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/77 (28%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 261
R FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q + +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 262 TPKRTIGGKEVDVKRAT 312
+ IG + V + RAT
Sbjct: 90 KNGKYIGSRPVKLSRAT 106
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTP 267
FV G++S + +DE++ FS+FGT+ V + + +GF F++F + E+ + +
Sbjct: 104 FVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLN 163
Query: 268 KRTIGGKEVDVKRA 309
+ G+ ++V++A
Sbjct: 164 SQEFYGRVLNVQKA 177
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +1
Query: 76 DMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 240
D ++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 43.6 bits (98), Expect = 4e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 61 RRLKHDMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 240
+ L+ G +VG L + ++R +FS+FG +L + M ++ K + FI FES
Sbjct: 98 KNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLD 157
Query: 241 VVNDLLKT 264
V N + +T
Sbjct: 158 VANVVAET 165
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTP 267
FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325
Query: 268 KRTIGGKEVDVKRATPKP 321
+ I G+ V++ + P+P
Sbjct: 326 TKEIDGRMVNLDLSNPRP 343
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 270
FVG LS ++D++ F G I + +P D + KGF ++TF ++
Sbjct: 369 FVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNG 428
Query: 271 RTIGGKEVDVKRATPK 318
I G+ + +TP+
Sbjct: 429 HFIAGRPCRLDFSTPR 444
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 39.9 bits (89), Expect = 5e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 61 RRLKHDMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 228
+R + D V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 39.1 bits (87), Expect = 8e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKTP 267
FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 273 FVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNE 332
Query: 268 KRTIGGKEVDVKRA-TPKP 321
K+ G+ + + RA + KP
Sbjct: 333 KKMPEGRTLRIMRAKSTKP 351
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 270
+VG LS ++++I FS+ G I + M D+ GFCF+ + Q D LK
Sbjct: 35 YVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYIS 94
Query: 271 RT 276
RT
Sbjct: 95 RT 96
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 228
FVG L + S + ++ F G + V +P DKT ++KG+ F+ F
Sbjct: 95 FVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 189
FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 300 FVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 270
FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K K
Sbjct: 8 FVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELK 67
Query: 271 -RTIGGKEVDVKRATPK 318
+ + G+ + + ATP+
Sbjct: 68 NKKLHGRILRLDFATPR 84
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +1
Query: 94 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 273
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 274 TIGGKEVDVKRATPK 318
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 94 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPK 270
V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 103 VENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNN 162
Query: 271 RTIGGKE--VDVKR 306
+ G+E V +KR
Sbjct: 163 AELDGEELFVSIKR 176
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 76 DMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 255
D +VG + ++ +E+++ F+ G++ V + DK KGF +I F +V +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 256 L 258
L
Sbjct: 113 L 113
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.010
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMP 180
FVGGLS +S++E++ F FG I+ V++P
Sbjct: 306 FVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.010
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 261
R +VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 262 T--PKRTIGGKEVDVKRATP 315
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 34.7 bits (76), Expect = 0.018
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = +1
Query: 61 RRLKHDMGRFFVG--GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 234
++ +H RF V L ++ + ++ + F F I V M +D+ + +G C + FE+
Sbjct: 76 QKRQHSENRFGVRVENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFET 133
Query: 235 EQVVNDLLKTPKRT-IGGKEVDVKRATP 315
Q D KT + T + G E+ + + +P
Sbjct: 134 SQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.042
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTI-------------LEVEMPFDKTKNQRKGFCFITFE 231
+VG + S +SD+EI FS++G + E PF KN + + F+ F
Sbjct: 20 YVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQ-YGFVKFV 78
Query: 232 SEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 321
+ + + ++LK K T+G +++ +K P
Sbjct: 79 NAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 33.5 bits (73), Expect = 0.042
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKTP 267
FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 10 FVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLN 69
Query: 268 KRTIGGKEVDVKRATPKP 321
+G +++ V+ + P
Sbjct: 70 NSELGPRKIRVEFPSNDP 87
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 32.7 bits (71), Expect = 0.073
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 58 QRRLKHDMGRFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 228
Q K FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 220 QSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 32.7 bits (71), Expect = 0.073
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 249
FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 97 FVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 234
+ ++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/76 (17%), Positives = 38/76 (50%)
Frame = +1
Query: 94 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 273
V G+ E +++++ + F++FG + + + D+ KG+ I + + + +
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
Query: 274 TIGGKEVDVKRATPKP 321
++ ++++V A +P
Sbjct: 74 SLLDEKLEVDFAFLEP 89
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 118 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 297
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 298 V 300
+
Sbjct: 309 I 309
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.39
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 106 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 234
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 30.3 bits (65), Expect = 0.39
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 240
++ GL SD+ + + + FG + + D N KG+ F FE E+
Sbjct: 299 YIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.52
Identities = 10/46 (21%), Positives = 25/46 (54%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 228
+VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 8 YVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 103 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 198
L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 958 LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEM 177
F+G L + I++DEIR FG I ++++
Sbjct: 209 FLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +1
Query: 85 RFFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 258
R FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 234
FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 102 FVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = +1
Query: 91 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG------FCFITFESE 237
+VG L S ++ F FG + M + KN+ F FITFE++
Sbjct: 23 YVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKKNKSTDSKSPTLFAFITFENK 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,266
Number of Sequences: 5004
Number of extensions: 33503
Number of successful extensions: 132
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -