Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F06
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    38   0.002
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo...    34   0.032
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    32   0.13 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    31   0.17 
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    30   0.39 
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    30   0.39 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   2.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    28   2.1  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    27   2.8  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    27   2.8  
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   8.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   8.5  

>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
 Frame = +1

Query: 235 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAAS---QLTSKVIVAVGIDLPE 405
           G+ A    ++   IK I+  +GF G Y+GLSA +LG+  ++    L  K   AV I    
Sbjct: 197 GQAAQYRSSIDCIIKTIRL-EGFRGLYKGLSASLLGVGESTLQWVLYEKFKHAVAIRQLR 255

Query: 406 INDPPNIVTDDEPKVEDY-IKLGRRDMIMQTVAVVIAHPFHVVSVRMMAS-FIGKEEHYS 579
             +   I      KV D+  KLG    I + +A  IA+P  VV  R+  S  I     Y+
Sbjct: 256 RKE-LGIQETIYDKVLDWGGKLGGAG-IAKFMAAGIAYPHEVVRTRLRQSPSINGTPKYT 313

Query: 580 SLLGAIVSIYKDDGILGFLHGLIPKVL 660
            L+     ++ + GI+G   GL   +L
Sbjct: 314 GLIQCFKLVWMEQGIVGLYGGLTAHLL 340


>SPBC83.13 |||mitochondrial tricarboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 517 PFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKV 657
           P  V  V M +   G +     ++  I+SIYK++GI G   G +P++
Sbjct: 224 PLEVARVEMQSLTKGIQHSSPGIMQTIMSIYKNNGIKGLYRGAVPRM 270



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 508 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGLIP 651
           +  P  V  V+M A+         ++  AI +I    GILGF  GLIP
Sbjct: 28  LGQPLEVTKVQMAAN------RTQTMAQAIKAIMSRGGILGFYQGLIP 69


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 493 TVAVVIAHPFHVVSVRMMASFIGKEEHYSSL-LGAIVSIYKDDGILGFLHGLIPKVLG 663
           +VA +  +P   +  R+  S + + +H  S+ L     +YK  GI G+  G++  +LG
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSRGQHGKSIILSNAKELYKSVGIRGYYRGVLVGILG 297


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 496 VAVVIAHPFHVVSVRMMASFI-GKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLGDLT 672
           +   +  P  V+  R   + I G   +Y ++  AI  IYK +GI GF  G    +L  + 
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIP 298

Query: 673 CLAVT 687
            +++T
Sbjct: 299 VMSIT 303



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 538 RMMASF-IGKEEHYSSLLGAIVSIYKDDGILGFLHG 642
           RM   F +   + Y+SL   +V I+  +G++GF  G
Sbjct: 43  RMKIIFQVQNNKEYTSLTSTLVKIWNREGLIGFFRG 78


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 34/140 (24%), Positives = 53/140 (37%)
 Frame = +1

Query: 238 RPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDP 417
           RP   L    Q  + I   +G  G YRGL+A +    A S +      ++   L +   P
Sbjct: 138 RPNPRLKGFLQASRIIVHENGIRGLYRGLAATVARQAANSGVRFTAYNSIKQSL-QSRLP 196

Query: 418 PNIVTDDEPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKEEHYSSLLGAI 597
           P    D++        +G    +   + V    P   V  RM +    KE  Y + +   
Sbjct: 197 P----DEKLSTVTTFLVG---SVAGIITVYCTQPIDTVKSRMQSLSASKE--YKNSIHCA 247

Query: 598 VSIYKDDGILGFLHGLIPKV 657
             I   DG+L F  G  P++
Sbjct: 248 YKILTQDGLLRFWSGATPRL 267


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 508 IAHPFHVVSVRMMASFIGKEEHYSSLLGAIVSIYKDDGILGFLHGL 645
           +++PF V   +M    I K + +  L   + + YK+ G+ GF  GL
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQTTYKEAGMRGFFVGL 298


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 26/127 (20%), Positives = 51/127 (40%)
 Frame = +1

Query: 127  LHKYLLQQYAIPWXYAKVLIQLGYEPLAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFF 306
            LH  +++Q   PW ++      GY PLA      + G   + L + F+YI          
Sbjct: 3666 LHPSVIKQCEFPWSFSSESTDTGY-PLALEIEEDVDGTMNLHLSSNFKYI----GQTEII 3720

Query: 307  GCYRGLSARMLGLIAASQLTSKVIVAVGIDLPEINDPPNIVTDDEPKVEDYIKLGRRDMI 486
            G        +  L+  S               +I+  PN++  ++P+V+ YI     D++
Sbjct: 3721 GLLDSYDCYLSSLLETSN-------------AKISSRPNVLMPNQPEVKQYIPNVWNDVL 3767

Query: 487  MQTVAVV 507
             + + ++
Sbjct: 3768 KKLITIL 3774


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 235 GRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLGLI 348
           G+  M+L      ++ I  ++G  G YRG+   MLG +
Sbjct: 45  GKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 460 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 567
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 460 IKLGRRDMIMQTVAVVIAHPFHVVSVRMMASFIGKE 567
           +K+G +D     V    AHPFHVV +  M S  G +
Sbjct: 77  VKIGGKDSFHLRVR---AHPFHVVRINKMLSCAGAD 109


>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 652 KVLGDLTCLAVTGVLAYYVNKYF 720
           ++  D+TC  V   L Y+VNK+F
Sbjct: 66  EIANDVTCGRVETALLYFVNKFF 88


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 694  LAYYVNKYFVKTKDLRYYTIPLLTFITSTITYPMVVVSTCM 816
            L +Y +  F+  +   +YT+  +  + S  T+ +++ STC+
Sbjct: 1021 LLFYCSSIFISKE---FYTVEQMVQVLSLATFTLLMASTCI 1058


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 507 NDCYRLHDHVSAS*FDVIFNLGFIIGDDV 421
           NDC R ++H + S F  +  + F+  DD+
Sbjct: 635 NDCTRFYEHPTLSVFVKVEGIDFMKDDDI 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,888,035
Number of Sequences: 5004
Number of extensions: 83698
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)