Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F06
         (910 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.002
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.002
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.41 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   8.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 439 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 612
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 613 DDGILGFLHGLIPKVL 660
            +G   F  G    +L
Sbjct: 266 TEGGNAFFKGAFSNIL 281



 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 499 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 663
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G   G    V G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQG 185


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.002
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 439 EPKVEDYIKLGRRDMIMQTVAVVIAHPFHVVSVR-MMASFIGKEE-HYSSLLGAIVSIYK 612
           +PK   ++       ++ TVA ++++PF  V  R MM S   K E  Y S L    +IYK
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYK 265

Query: 613 DDGILGFLHGLIPKVL 660
            +G   F  G    +L
Sbjct: 266 TEGGNAFFKGAFSNIL 281



 Score = 26.2 bits (55), Expect = 0.41
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +1

Query: 499 AVVIAHPFHVVSVRMMASF--IGKEEHYSSLLGAIVSIYKDDGILGFLHGLIPKVLG 663
           ++   +P      R+ A     G E  ++ L   +  I+K DGI G   G    V G
Sbjct: 129 SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQG 185


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
 Frame = +1

Query: 31  GNSLRLLQKAKVLDL-RLVKIWTKLRKKE*PRYLHKYLLQQYAIPWXYAKVLIQL-GYEP 204
           G +LR+L+ AK+L L RL+++   +R     ++   Y+LQ        A+  +       
Sbjct: 202 GRALRILRLAKLLSLVRLLRLSRLVRYVS--QWEEVYILQNLQKKRTRAEGRLSSDNMSK 259

Query: 205 LAPRRSTTLFGRPAMILPNVFQYIKYIKASDGFFGCYRGLSARMLG 342
            +P R  TLF   A +   +F  I  +     + GC + L   + G
Sbjct: 260 KSPVRKATLFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQG 305


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 786 CYCACYKCK 760
           CYC C KCK
Sbjct: 2   CYCTCEKCK 10


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 47  FCRKQKCLI*DLSKYG------RN*ERKNSRVTFTNTCYNNMP 157
           +CR QKCL   + +        R  ER  S V  T++ +++MP
Sbjct: 164 YCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMP 206


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +2

Query: 47  FCRKQKCLI*DLSKYG------RN*ERKNSRVTFTNTCYNNMP 157
           +CR QKCL   + +        R  ER  S V  T++ +++MP
Sbjct: 164 YCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSDMP 206


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 555 YWERRTLQLTVG 590
           +WERRTLQ++ G
Sbjct: 187 FWERRTLQISDG 198


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 555 YWERRTLQLTVG 590
           +WERRTLQ++ G
Sbjct: 240 FWERRTLQISDG 251


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 73  LRLVKIWTKLRKKE*PRYLHKY 138
           LR+ +  T  RKK  P Y +KY
Sbjct: 281 LRIARQMTTSRKKVLPYYWYKY 302


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 697 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 789
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = +1

Query: 172 AKVLIQLGYEP 204
           AK+L+Q+G+EP
Sbjct: 163 AKLLLQMGFEP 173


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +1

Query: 697 AYYVNKYFVKTKDLRYYTIPLLTFITSTITY 789
           AYY++++  +  DL YY   +L  + + + +
Sbjct: 181 AYYLHQFAPEQPDLNYYNPVVLDDMQNVLRF 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,376
Number of Sequences: 438
Number of extensions: 6608
Number of successful extensions: 30
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)