Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_F05
(937 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.31
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.71
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.94
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.31
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Frame = +3
Query: 543 PPPPXRPGXXXPP*GGXXGATXTPP--------EXGEKXVXXDGATTPKXLXPRKXPXSH 698
PPPP R PP G + PP G + G + P PR P +
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 699 XCPPP 713
PPP
Sbjct: 374 RQPPP 378
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 485 PPXPPPPXXRXXXPPPPG 432
PP PPPP R PP G
Sbjct: 311 PPPPPPPSRRNRGKPPIG 328
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/74 (22%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Frame = +3
Query: 471 GGGGGHXXXEXTPPPPGEQXXXXGP-PPPXRPGXXXPP*GGXXGATXTPPEXGEKXVXXD 647
G G + PPPP P PP R PP PP +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 648 GATTPKXLXPRKXP 689
P + R P
Sbjct: 388 PPAPPPAIPGRSAP 401
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 520 PGGGGVXSXXXCPPPPPPR*XEXXPPPXP 434
P G G + PPPPPPR P P
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLP 354
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.5 bits (63), Expect = 0.71
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 485 PPXPPPPXXRXXXPPPP 435
PP PPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 484 PPPPPPR*XEXXPPPXPGRVLXVSXPG 404
PPPPPP PPP P VS G
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 507 PPPPGEQXXXXGPPPPXRP 563
PPPP GPPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 507 PPPPGEQXXXXGPPPPXRP 563
PPPPG PPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -3
Query: 485 PPXPPPPXXRXXXPPPPGXCAAXQXAGXXXXXP 387
PP PPP PPPP A G P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = +1
Query: 499 KXRPPPXGSKXXXXGPPXPXGRXXXAPHRGGXXGXPXPPRXXGKKXXXPTGRXP 660
K PPP + P P AP GG P PP G P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 237 PPXGGGXXPPPPXXXGGGTPP 299
P GG PPPP G PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = +3
Query: 480 GGHXXXEXTPPPPGEQXXXXGPPPPXRPGXXXPP*GGXXGAT 605
G + PPPP PP P PP G GAT
Sbjct: 1873 GSDLSNQAAPPPPPPMALPKAGPPSAAPTSALPPAGPPAGAT 1914
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 214 HKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 248
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 227 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 261
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 240 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 274
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 253 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 287
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 266 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 279 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 313
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 292 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 326
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 305 HEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPP 339
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Frame = +3
Query: 486 HXXXEXTPPPP-GEQXXXXGPPPP--XRPGXXXPP 581
H E PPPP + PPPP PG PP
Sbjct: 201 HEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPP 235
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Frame = -1
Query: 484 PPPPPPR*XE----XXPPPXPGRV 425
PPPPPP E PPP PG V
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYV 33
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -3
Query: 485 PPXPPPPXXRXXXPPPP 435
PP PPPP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPP 26
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Frame = -3
Query: 485 PPXPPP---PXXRXXXPPPPG 432
PP PPP P + PPPPG
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 507 PPPPGEQXXXXGPPPPXRPG 566
PPPPG + PPPP PG
Sbjct: 13 PPPPGFEPPSQ-PPPPPPPG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,470
Number of Sequences: 5004
Number of extensions: 31014
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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