Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_F04
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 31 0.16
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|... 30 0.50
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 29 0.87
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1... 29 0.87
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 29 1.2
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 3.5
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 27 4.7
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.7
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom... 26 6.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 6.1
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 26 8.1
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 26 8.1
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 31.5 bits (68), Expect = 0.16
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
Frame = -1
Query: 409 YAFSKVVQHLRHILSGSPSLQ-ETFTSAIAVSISA*FPDNLYLNNGHKVLLLVRHIRQDC 233
Y S+ L+ ++ L +TF++ I V +S NL +NN + L + + C
Sbjct: 215 YFTSRTHSQLQQLVQEIKKLNNQTFSTPIRV-VSLASRKNLCINNEVRKLRPTSALNEKC 273
Query: 232 ISTMGFEFVSIFNELSADNIDNKSEIVTQLQQSKEITKNAASRVQNQSTAPFYFRLTIHS 53
I G F + + D + E + ++ +E+ + Q P+Y
Sbjct: 274 IELQGSAHKCPFLQDNTQLWDFRDEALAEIMDIEELVELG----QRLKVCPYYGTREAVD 329
Query: 52 QSQILRIPYSEIVXE 8
+QI+ +PY ++ E
Sbjct: 330 SAQIVTLPYPLLLQE 344
>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
2|||Manual
Length = 403
Score = 29.9 bits (64), Expect = 0.50
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 205 SIFNELSADNIDNKSEIVTQLQQSKEITKNAASRVQNQSTAPFYFRLTIHSQSQ 44
SIF + + S T QS +NAASR N +T P + T+++ ++
Sbjct: 65 SIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTK 118
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 29.1 bits (62), Expect = 0.87
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -1
Query: 670 VESTFLITVLAITISFPSTVSTGILFSLSRLNSKS 566
+ ++L+TV T++FP +++ L +LS L+S+S
Sbjct: 927 IYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRS 961
>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 318
Score = 29.1 bits (62), Expect = 0.87
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = -1
Query: 574 SKSHLGSDLTLIV-PISLLMSVNESKAIF-FVSTLPLDLAKSFLSFLSDLSATVLSKYAF 401
+KS+L +T I P L S+ +A F + S + + +++ LS +
Sbjct: 50 AKSNLRQPITTIAQPAILACSIALLRAFPPFTKKFRFYVGHSLGEYSAFVASQTLSFSSA 109
Query: 400 SKVVQHLRHILSGSPSLQETFTSAIAVSISA*FPDNLYLNNGHKVLLLVRHI 245
K+VQ +S + +L + TS +A+++++ FP + +LN + + R I
Sbjct: 110 LKLVQARAKAMSYASALCQNPTSMLAITLTSRFPTDNFLNTVYSAVQKYRLI 161
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 550 LTLIVP--ISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLR 377
+ LI P L +++ ++ + + S L + LSF D L+ ++ S QHL
Sbjct: 167 ICLIKPSIFDLAITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFSLSNYQQHLY 226
Query: 376 HILSGSPSLQ 347
+L+ + SL+
Sbjct: 227 QVLTQNVSLR 236
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.1 bits (57), Expect = 3.5
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Frame = -1
Query: 637 ITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVP------ISLLMSVNESKAIFFVSTL 476
+ I + S V + +++SL K +GS++ ++P ++L V E ++T
Sbjct: 198 LAIYYVSCVVSQLVYSLGGSFFKGSVGSEMIEVIPFFHQIAFTILNRVGEDNPKSVIAT- 256
Query: 475 PLDLAKSFLSFLSDLSATVLSKYAFSKVVQHL-RHILSGSPSLQETFTSAIAVSISA 308
LA S L+ L +L ++++ RHIL G +F AV +S+
Sbjct: 257 -TILAYCLSSILTGLVFFILGILRLGRLIEFFPRHILLGCIGGVGSFLVLTAVEVSS 312
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 340 KSLVMMDYLKGYALSVARLWKRRTCSRQLLRGLTE 444
K V+M Y+ V ++W+R TCS L LTE
Sbjct: 197 KGSVVMGYMASLG-HVTQVWERGTCSPSRLSFLTE 230
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 187 SADNIDNKSEIVTQLQQSKEITKNAASRVQNQSTAPFYFRLT-IHSQSQILRIPYSE 20
S+ N D+ + + S + KN++S + T+P + T I S S +L P S+
Sbjct: 46 SSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTEIDSSSSMLPPPSSD 102
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 303 NYAEMLTAIADVKVSCNDGLPERICLKCCTT 395
NYA++L D+ S + G P I CTT
Sbjct: 49 NYADLLKRNEDLNASLSTGSPVEITSTSCTT 79
>SPBC31F10.02 |||thioesterase superfamily
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 283 NNGHKVLLLVRHIRQDCISTMGFE 212
++G KVL VR + QD ++T GF+
Sbjct: 5 SSGTKVLSFVRSVWQDFVNTNGFD 28
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 420 TVAERSDRKLRKLLAKSK-GNVLTKKIAFDSFTDIKSEIGTISVKSE--PKWDLELSLDS 590
T+AE +RK+ +LL K K G +K A TD + G ++ ++ P D
Sbjct: 372 TIAELRERKILRLLLKVKNGTPPMRKSALRQLTDQARDFGAAALFNQILPLLMERTLEDQ 431
Query: 591 ENKMPVETVD 620
E + V+ +D
Sbjct: 432 ERHLLVKVID 441
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -1
Query: 316 ISA*FPDNLYLN----NGHKVLLLVRHIRQDCISTMGFEFVSIFNELSADNIDNKSEIV 152
+SA + DNL ++ N H+ L H+ D S F I ++ S D+ DN+ + V
Sbjct: 211 VSASWVDNLDMDMASFNSHRERFLTEHVNMDERSDDDFLLGLISSDSSVDDHDNEQDDV 269
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/98 (21%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Frame = -1
Query: 637 ITISFPSTVSTGILFSLSRLNSKSHLGSDLTL-IVPISLLMSVNESKAIFFVSTL----- 476
+++ F S+V +L L K+ + +L L +V ++ ++S+++ +++ ++++
Sbjct: 348 LSLPFSSSVVEIVLKFL--YTDKTDIAPELALDVVYVADMLSLDKDRSLKSLASIVITKQ 405
Query: 475 --PLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHIL 368
P+D L D S L +YA + HL H++
Sbjct: 406 EEPIDSIYDILRTAWDTSTPRLEQYASEYMANHLEHLI 443
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +3
Query: 336 VKVSCNDGLPERICLKCCTTLEKAYLLKTVAERSDRKLRKLLAKSKGNVLTKKIAFDSF 512
++V CND L +++ +KC K VA ++ R+++ K +V I +
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADY 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,848
Number of Sequences: 5004
Number of extensions: 58175
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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