Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_F04
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1253 + 27349868-27349998,27350223-27350251,27350616-273506... 32 0.53
11_04_0175 + 14501275-14501287,14501512-14501540,14501905-145019... 31 1.2
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 29 6.5
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 6.5
04_03_0128 - 11530618-11530838,11532683-11532809,11533746-115338... 28 8.6
02_01_0412 - 3005600-3007759 28 8.6
>12_02_1253 +
27349868-27349998,27350223-27350251,27350616-27350658,
27351005-27351137,27351238-27351444,27351578-27351619
Length = 194
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 516 DIKSEIGTISVKSEPKWDLELSLDSENKMPVETVDGKDIVIANTVIRKVDSTMDAPKVES 695
DI I T SV SE + DL + +EN+ P +T + NTV++ + ++ + S
Sbjct: 97 DILKMITTQSVASEQQSDLAIDCPTENREPHDTTKKARSIQNNTVVKALFNSANLQGTTS 156
Query: 696 YW*RRCCSDHL 728
+ S HL
Sbjct: 157 TTRQNISSQHL 167
>11_04_0175 +
14501275-14501287,14501512-14501540,14501905-14501947,
14502284-14502426,14502527-14502733,14503530-14503601
Length = 168
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 516 DIKSEIGTISVKSEPKWDLELSLDSENKMPVETVDGKDIVIANTVIRKVDSTMDAPKVES 695
DI I T SV SE + DL + +EN+ P +T + NTV++ + + + S
Sbjct: 61 DILKMITTQSVASEQQSDLAIDCPTENREPHDTTKKARSIQNNTVVKALFNGANLQGTTS 120
Query: 696 YW*RRCCSDHL 728
+ S HL
Sbjct: 121 TTRQNISSQHL 131
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 640 AITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVPISLL 521
A+T SFP G LFS + ++ HL S T++ I LL
Sbjct: 703 ALTDSFPGRTQAGDLFSAAS-RARHHLPSGTTIVDQIDLL 741
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Frame = -1
Query: 706 LHQ*LSTFGASIVESTFLITVLAITISFPSTVSTGILFS-LSRLNSKSHLGSDLTLIVPI 530
+ Q L FG+ V + + L+ SF + TG+ S L +NS + S L+V
Sbjct: 1956 ISQYLGFFGSKPVAALLIYQCLSHWRSF-EAMKTGVFDSILQAINSATESTSCNVLMVAF 2014
Query: 529 SLLMSVNESKAIFF----VSTLPLDLAKSFLSFLSDLSATVLSKYAFSKV 392
L + N+++A+ + +STL + L +SF + + +S +++ ++
Sbjct: 2015 PPLKAQNDTRALAYWLSNLSTLTVLLQRSFKTTRTAISTPQRRRFSSERI 2064
>04_03_0128 -
11530618-11530838,11532683-11532809,11533746-11533892,
11533981-11534082,11534207-11534332,11535507-11535584,
11535780-11535827,11536005-11536193
Length = 345
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +3
Query: 426 AERSDRKLRKLLAKSKGNVLTKKIAFDSFTDIKSEIGTIS 545
A R++RK R+ L KSK + LT+K D + KSE G S
Sbjct: 241 AARTNRKSRRSL-KSKNSSLTEKSLSDEESSYKSEDGDSS 279
>02_01_0412 - 3005600-3007759
Length = 719
Score = 28.3 bits (60), Expect = 8.6
Identities = 26/114 (22%), Positives = 48/114 (42%)
Frame = -1
Query: 679 ASIVESTFLITVLAITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVPISLLMSVNESK 500
+S+ E T+L+T+ + F ++ +L L + G+D T +P S+ N +
Sbjct: 319 SSLGECTYLVTINLSSNKFTGELANVNFSNLPNLKALDFSGNDFTGTIPESIYSCSNLTS 378
Query: 499 AIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHILSGSPSLQETF 338
+ L L K+ + L + +S F+ + L HIL +L F
Sbjct: 379 LRLSANRLHGQLTKN-IGNLKSIIFLSISYNNFTNITNTL-HILKSLRNLSVLF 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,892,822
Number of Sequences: 37544
Number of extensions: 331513
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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