Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F04
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of...    29   3.3  
AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical ...    29   3.3  
U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical p...    29   5.8  
AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical...    29   5.8  
U28940-4|AAA68350.1|  106|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 731 IRGNHQRILMTTMWMLRSEMMMTMTITSHQWKIKN 835
           +RGNH+   + TM+  + EMM      SH WK+ N
Sbjct: 122 LRGNHEVRRVNTMYGFKEEMMRKR--NSHLWKVFN 154


>AY152852-1|AAN62580.1|  770|Caenorhabditis elegans suppressor of
           presenilin 5 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 514 VNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHILSGS 359
           + E KA F VSTLP+ + K   + ++D  A   +     K V+ +R+I  GS
Sbjct: 467 IEEMKAAFVVSTLPIGVLKK--TIIADERAPTFTPSLPDKKVEAIRNIGCGS 516


>AL032636-3|CAA21604.1|  770|Caenorhabditis elegans Hypothetical
           protein Y40B1B.6 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 514 VNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRHILSGS 359
           + E KA F VSTLP+ + K   + ++D  A   +     K V+ +R+I  GS
Sbjct: 467 IEEMKAAFVVSTLPIGVLKK--TIIADERAPTFTPSLPDKKVEAIRNIGCGS 516


>U28944-12|AAA68371.2|  363|Caenorhabditis elegans Hypothetical
           protein C18A3.2 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 532 ISLLMSVNESKAIFFVSTLPLDLAKSFLSFLSDLSATVLSKYAFSKVVQHLRH 374
           + +L+ ++ S    F+ T  ++ +K+ +SFL   S  V     F  +V H+RH
Sbjct: 14  VFILLLISTSIPYTFLRTCCVNASKTSISFLGCASCGVFIATCFLGLVPHVRH 66


>AF078790-16|AAC26939.1|  190|Caenorhabditis elegans Hypothetical
           protein F36H12.17 protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 445 FLSDLSATVLSKYAFS-KVVQHLRHILSGSPSLQETFTSAIAVSISA*FPDNLYLN 281
           F +D S+   S Y  S +    L   LSGSP  Q    +  + SI    PD++++N
Sbjct: 43  FGNDTSSYASSSYVLSVQTSSPLNIYLSGSPECQRILLAENSGSIEMEIPDDIWIN 98


>U28940-4|AAA68350.1|  106|Caenorhabditis elegans Hypothetical
           protein T24H7.4 protein.
          Length = 106

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/76 (19%), Positives = 33/76 (43%)
 Frame = +3

Query: 294 LSGNYAEMLTAIADVKVSCNDGLPERICLKCCTTLEKAYLLKTVAERSDRKLRKLLAKSK 473
           +S N  +++   A +  + + G    +  KC   LE+   ++ + E     L + L  ++
Sbjct: 7   ISSNVHKLVGVTAGMNTAASTGPMNLVLDKCSVVLEELRTIQILTETHSEGLSEQLKMTE 66

Query: 474 GNVLTKKIAFDSFTDI 521
            N+L  +  FD    +
Sbjct: 67  KNILEMENLFDQIDQL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,113
Number of Sequences: 27780
Number of extensions: 321050
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)