Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F04
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.70 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 16/77 (20%), Positives = 37/77 (48%)
 Frame = -1

Query: 676 SIVESTFLITVLAITISFPSTVSTGILFSLSRLNSKSHLGSDLTLIVPISLLMSVNESKA 497
           S +   FLIT+L   +S    ++     SL  L+ K +     ++++  S  + ++    
Sbjct: 351 SKIGQVFLITILDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYI 410

Query: 496 IFFVSTLPLDLAKSFLS 446
           I  +  +P ++ ++F+S
Sbjct: 411 IMLIIFIPRNIYENFIS 427


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 652 ITVLAITISFPSTVSTGILFS 590
           IT +++TIS  ++V+   LFS
Sbjct: 879 ITSMSVTISLSASVTIACLFS 899


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,048
Number of Sequences: 438
Number of extensions: 3498
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)