Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F03
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.68 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   8.4  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   8.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 62  KYNRIKELKLMVSVFKEEKFIFPSSLI 142
           KY+ IKE++ +  VFKE   ++P + I
Sbjct: 346 KYDDIKEMEYLDKVFKETLRMYPPASI 372


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 232 RGVPEVTDAYSKKCSCNREKATVFCRSCGFYCNG 333
           RG P+ ++    +     +  TV CR CG   +G
Sbjct: 43  RGAPQDSENLLGRVLAEFDGTTVLCRVCGDKASG 76


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = +3

Query: 729 ILVYLVLNISHRT---HVIDHWL 788
           +L  LVLN  HRT   +V+  W+
Sbjct: 341 VLTVLVLNFHHRTPDRYVMPSWI 363


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = +3

Query: 729 ILVYLVLNISHRT---HVIDHWL 788
           +L  LVLN  HRT   +V+  W+
Sbjct: 341 VLTVLVLNFHHRTPDRYVMPSWI 363


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 448 KMVLFYIHPGIQMNGILDILKCLTERSL-EDVAGISIEY 335
           K V+FY+H G  ++G     +   +  L +DV  +S  Y
Sbjct: 18  KPVMFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNY 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,201
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)