Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_F01
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.16 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.48 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    28   1.5  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    27   3.4  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   4.5  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   7.8  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
 Frame = +1

Query: 157 LSFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIK--LDNWYQNELPKK--IKSRGK 324
           L  LE  +K+FD       Q+++   ++  ++ +EL K   D   ++ELP+K   +S  K
Sbjct: 10  LKSLEYRSKKFDKK----SQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDK 65

Query: 325 DAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTAL 501
           D H +     + +K K+ +GK   +   L   N P+    ET +  F++   + S     
Sbjct: 66  DKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPT 125

Query: 502 SNLKG 516
               G
Sbjct: 126 DKTSG 130


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +1

Query: 289 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKK 456
           +EL   +++ G +A     E++++++     GK Y Q+   ++V T + V    ++E K+
Sbjct: 57  HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114

Query: 457 AFRKLPNIESAMTALSNLKGV 519
           AF    + E+   +L NL+ V
Sbjct: 115 AFELFDDDETGKISLRNLRRV 135


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +1

Query: 175 NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 312
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 133 WLPRKTRLLSFLEANAKEFDSVLKLYPQA 219
           WLP   RLL   E + + ++++ ++YP A
Sbjct: 266 WLPESPRLLVKKERSQEAYNTLARIYPTA 294


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 619 SDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKCFHTW*SWPSGRTTLYR 765
           SD  A+   + + H+      +NE  N C K+    + +  S R +LY+
Sbjct: 94  SDCYAKGMDDIMKHVATYTATMNERMNACHKEYIKMYEALASERNSLYK 142


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 178 AKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEE 348
           A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D     EE
Sbjct: 113 ARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEE 169


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -2

Query: 777 CGXS---PIQCCASRGPALPCVETFLA 706
           CG S   P +CC    P LPC   F+A
Sbjct: 182 CGSSESGPPECCICLMPVLPCQALFVA 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,822
Number of Sequences: 5004
Number of extensions: 74676
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)