Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E22
         (949 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.43 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 13/45 (28%), Positives = 15/45 (33%)
 Frame = +2

Query: 728 PAXXPSXAPRXPTRXRXSGXPXRPPPPPXXGXPASPXPPXXXXPP 862
           P   P  +P+ P R         PPP    G P S  P      P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 13/47 (27%), Positives = 15/47 (31%)
 Frame = +2

Query: 755 RXPTRXRXSGXPXRPPPPPXXGXPASPXPPXXXXPPTPXX*RPXRXP 895
           + P   + S  P    P P      SP  P    PP P    P   P
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +2

Query: 656 SPKSTPXPXX--APPHRPKNTPXRXPPAXXPSXAP 754
           SP  +P      +PP+  +  P   PP   PS  P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 779  SGXPXRPPPPP 811
            SG P  PPPPP
Sbjct: 1854 SGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 443 RPXXXPPPPAXVGP 402
           +P   PPPP+  GP
Sbjct: 340 KPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 788 PXRPPPPPXXGXPAS 832
           P  PPPPP    P S
Sbjct: 341 PAPPPPPPSSSGPDS 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,809
Number of Sequences: 438
Number of extensions: 3359
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)