Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E21
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   2.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   4.6  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    26   8.1  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   8.1  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 488 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQQSTEKKVLKIS 649
           F S+++ K KISLY++K        D  L +    +R +  ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 771 TANSNKSCWFKSSTASWKLLSTWFMKM 691
           T +S  + W + + ASW +L  WF  M
Sbjct: 248 TIHSKNAVWNQYTVASWVMLFMWFFYM 274


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 563 DGVLHYYDSEIREVVKLQQST 625
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 243 AHHQIRYSLPRRRKVLARL*LPCSILLPFETPENLAAHLRAPR 115
           AH +   ++P  R  LA   +P SI +PF   E  AA + AP+
Sbjct: 187 AHERFLGNVPESRPGLASGHIPTSINIPF--TETTAAGITAPK 227


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/96 (17%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
 Frame = +2

Query: 455  HTKNYDVFEGRFYSMAQDKTK-ISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQQSTEK 631
            + +NYD+F+   +SM+  + K  +L ++ E+      +   +Y D      + ++  + +
Sbjct: 1258 NARNYDLFDDSIFSMSFAELKYTALSNIVEMEKLGFANRRNNYQDMVNSIALDIRNKSRR 1317

Query: 632  KVLKISQ--TKYEEILKISKKYIFINQVDKSFHEAV 733
            ++ +  +    ++ +L + +K  F++   KS++E +
Sbjct: 1318 RMQRQRELDAGHQSLLNLREKRAFLDSQLKSYNEYI 1353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,576
Number of Sequences: 5004
Number of extensions: 68986
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)