Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E19
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    81   1e-15
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        81   1e-15
U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   5.5  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   5.5  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   5.5  

>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
 Frame = +2

Query: 290 NRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNL 469
           NRP++PHLT+Y  QLT +LS  HR +G ++       GIG  V   D + ++  I   NL
Sbjct: 51  NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110

Query: 470 SPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL-SIKEVYSTGY 604
             A   + K IIA P+ +H  NGIR L +D AKG+ ++ ++Y +GY
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
 Frame = +2

Query: 290 NRPLSPHLTIYSFQLTAVLSITHRATGMMLTTYASALGIGALVSQNDISHYITMIEGLNL 469
           NRP++PHLT+Y  QLT +LS  HR +G ++       GIG  V   D + ++  I   NL
Sbjct: 51  NRPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFDFTAFVDFIRSWNL 110

Query: 470 SPATLFLAKVIIAAPLGYHFANGIRHLYWDTAKGL-SIKEVYSTGY 604
             A   + K IIA P+ +H  NGIR L +D AKG+ ++ ++Y +GY
Sbjct: 111 PCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGY 156


>U64605-3|AAF98605.3|  423|Caenorhabditis elegans Hypothetical
           protein C05D9.3 protein.
          Length = 423

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 391 GICCQHHSSCSMCDREHSSQLEGVYC*MRRKWTIQLSIPHIM 266
           G C + H+ C+ C   HSS      C ++ K+T +   PH++
Sbjct: 34  GQCIKAHAECAWCIDPHSSLTN--RCQLKSKFTNETCTPHLV 73


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 483 KVAGERLSPSIMVM*CEI--SFCDTNA 409
           KV GERLSP I    C++  SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 483 KVAGERLSPSIMVM*CEI--SFCDTNA 409
           KV GERLSP I    C++  SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 483 KVAGERLSPSIMVM*CEI--SFCDTNA 409
           KV GERLSP I    C++  SFC +N+
Sbjct: 151 KVCGERLSPQIACDHCDLRTSFCKSNS 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,842
Number of Sequences: 27780
Number of extensions: 299896
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)