Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E17
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    29   0.66 
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    29   1.1  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    28   1.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   2.0  
SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   2.7  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   6.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   8.1  

>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 274 KSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNW---ELSKAAEEMKNNI 417
           +S+  + +W+KY  E   +R  ++    + +P +W   + S + E M NN+
Sbjct: 33  RSDPRWLKWEKYLREFDMTREGNVTNTPKAIPSSWNPNDKSDSLELMNNNM 83


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 503 GTQGPYVRSTRSPWRRANTQRRDFEVPFVMLFF 405
           GTQG Y+   ++ W   NT   DF  P +  FF
Sbjct: 125 GTQGEYIEFKKTIWHEQNTDGSDF--PSMKTFF 155


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +1

Query: 271 KKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWELSKAAEEMKNNITNGTSKSRR 444
           K  +  Y +W+    E ++ +++ +   +Q  P N EL++ +E +  +    TSK ++
Sbjct: 4   KGKKSGYADWEDDLGEDISGQNEYLDNTSQDSPQNDELAEKSENLAVSSEKTTSKKKK 61


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 271  KKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWELSK-AAEEMKNNITNGTS 432
            ++SEE Y+E ++   +V++  SD   ++ +     WE+   A EE  N++ +  S
Sbjct: 844  QESEEEYEEVEQSLMDVVDEMSDLAESVPEEEVDGWEVEDLAPEEAVNDVVDDAS 898


>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -1

Query: 283 PRTSCMPDRRRLREDMSRPSHYRCSNPILIYNP-SSCFQVRLP*VRSTRQFP 131
           P  S M D+RR RED+  P     S     + P SS  Q  +P VR     P
Sbjct: 57  PVDSAMIDQRRRREDLPTPERPEASAQQHAFFPGSSSQQTDIPNVRPQPHIP 108


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 139 QFPRCVACTQQVDTRLSG*RRHVCP*KYH 53
           + P CV C +++D+ ++G    VC   +H
Sbjct: 204 ELPTCVVCLERMDSSITGLITIVCQHTFH 232


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 184 SDCKSESGSNTDSEMAGTYPHEDAADLAY 270
           SDC S   S+  +    T  H+DA D+ Y
Sbjct: 355 SDCPSRHSSDIRNHSCPTLYHDDAEDIYY 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,990
Number of Sequences: 5004
Number of extensions: 65199
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)