Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_E17
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 33 0.40
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645... 30 2.8
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 29 3.7
09_04_0377 + 17086775-17088310 29 4.9
04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301 29 4.9
12_02_1055 + 25725904-25726267,25726381-25726436 29 6.5
12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388... 29 6.5
08_01_0941 - 9301603-9301788,9301866-9301958,9302060-9302120,930... 29 6.5
03_05_0063 - 20375038-20375257,20375338-20375426,20375542-203757... 29 6.5
03_05_0977 + 29355824-29357056 28 8.5
>01_07_0306 +
42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 32.7 bits (71), Expect = 0.40
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 457 LRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPXDQTGXGSK 633
L G VD P V H N+ +R LP++ AG GG D Q+ GS+
Sbjct: 251 LNRGNDVDRDVKPLVQHRPNNEARMRSSDGLPIRHGASAGALGGSKMDGGSQQSNAGSR 309
>06_02_0064 +
11062798-11063568,11064212-11064261,11064354-11064510,
11064598-11064816,11065301-11065429,11066502-11068031,
11068654-11069013,11069086-11069205,11069727-11069897,
11070022-11070180,11070327-11070452,11070660-11070968
Length = 1366
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 665 GHXHPLPHQXRLEPXPVWSXGVSFTYPPLPP 573
G P PH + P P+ S G ++YPP P
Sbjct: 50 GAAAPAPHHGVVVPPPMTSGGGPYSYPPATP 80
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 196 SESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSD 339
SESGSNT S G Y A+ E+ ++W+++ + S+
Sbjct: 227 SESGSNTPSIAEGLYEPHSQAESWQDDLEQERRDWEQFSHAITGEESE 274
>09_04_0377 + 17086775-17088310
Length = 511
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/89 (19%), Positives = 38/89 (42%)
Frame = +1
Query: 175 NNCSDCKSESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTI 354
++ SD + + S + + G+Y ED+ D KK +++ + + S T
Sbjct: 233 HHSSDTEGDDNSKAEEDSEGSYDSEDSMDRRKKKRSRRHKKSKRRGRSSRRKKRKSNDTA 292
Query: 355 TQGLPMNWELSKAAEEMKNNITNGTSKSR 441
++G ++ A+ + + + KSR
Sbjct: 293 SEGSSEEEAVAAASGSSPSPLRDSKKKSR 321
>04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301
Length = 662
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 841 AQFDGVMSRFPXHGQFLTXKARLYFDXXG 755
A FDG ++R+P G+FL K R FD G
Sbjct: 544 AAFDGAIARYPNAGEFLRVKDR--FDPEG 570
>12_02_1055 + 25725904-25726267,25726381-25726436
Length = 139
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/85 (21%), Positives = 38/85 (44%)
Frame = +1
Query: 160 AVSLGNNCSDCKSESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSD 339
A S + SD + E+G ++DSE +Y A+ A+ + ++++ Y R+
Sbjct: 55 ATSSDEDASDSEEEAGMSSDSEDDSSYNPPKIANTAFILEDSSHRDGSIYKGNSEWKRTY 114
Query: 340 SILTITQGLPMNWELSKAAEEMKNN 414
I + + L + + K ++ N
Sbjct: 115 RIADLEESLGSSCSILKPLTKIATN 139
>12_01_0490 +
3878436-3878466,3878559-3879113,3879218-3879777,
3880660-3880965,3881071-3881202,3881623-3881756,
3881939-3882015,3882084-3882226,3883376-3883633,
3884085-3884111
Length = 740
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 277 TSCMPDRRRLREDMSRPSHYRCSNPILI 194
+S +PD L D +PS Y C+ P+L+
Sbjct: 148 SSVLPDHPSLSNDPDKPSSYVCTPPLLM 175
>08_01_0941 -
9301603-9301788,9301866-9301958,9302060-9302120,
9302397-9302648,9302903-9303720,9303993-9304490
Length = 635
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Frame = +1
Query: 199 ESGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNW 378
++G S A P++ L K S E Q KY N++ L T P
Sbjct: 18 KTGRTPFSTYANITPNQWEDFLTLKNSPEEIQRSQKYSELAKNNKFPHRLGFTGYAPKVE 77
Query: 379 ELSKAAEEMKN-----NITNGTSKSRRWVFA 456
+ +K EEM+ + T +SR WV A
Sbjct: 78 QWTKEGEEMRKAGLPVPMEKWTQRSRNWVRA 108
>03_05_0063 -
20375038-20375257,20375338-20375426,20375542-20375730,
20377507-20378175,20379597-20379806
Length = 458
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 692 SVHVLDGDAGHXHPLPHQXRLEPXPVWS 609
+VH+ GD G+ L H+ R P P WS
Sbjct: 369 AVHITIGDGGNREGLAHRYR-NPKPAWS 395
>03_05_0977 + 29355824-29357056
Length = 410
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/80 (22%), Positives = 33/80 (41%)
Frame = +1
Query: 202 SGSNTDSEMAGTYPHEDAADLAYKKSEETYQEWDKYWSEVMNSRSDSILTITQGLPMNWE 381
S SNTD+ + +D A S + QE ++V+N++ + +T +N+
Sbjct: 292 SESNTDTAPVNLDGNHTGSDQANSTSLKGQQEQQANSTDVLNNQIKLFIDLTSAAELNYR 351
Query: 382 LSKAAEEMKNNITNGTSKSR 441
+ + N TS R
Sbjct: 352 PNGTLASASTDAENATSVDR 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,352
Number of Sequences: 37544
Number of extensions: 473581
Number of successful extensions: 1370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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