Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E17
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.17 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.52 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 239 ILTKTPPIWHTRSPRKRTRNG 301
           I  + PP WHTRS  KR   G
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAG 628


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -1

Query: 310 NIYPIPGTFPRTSCMPD--RRRLREDMSRPSHYRCSNPILIYNPSS 179
           ++YP+  T P++       R ++  D + P  YR  NP LI +  S
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPS 439


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 107 LLCTRDAPRKLTRGPYLRQSHLETTARIVNQNRVRTPIVR 226
           LL  + +PR LT G +  +  LET     +Q + +  +++
Sbjct: 488 LLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMK 527


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 7   SYDSL*GIP*DLSCACDTFRDTRAAFSRLNGYLPAVYTR 123
           SY+SL  +P  L  +    R+   A++ L      ++TR
Sbjct: 269 SYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTR 307


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 90  LKRVSTCCVHATHRG 134
           LK +  C  H TH+G
Sbjct: 564 LKMIQACSHHLTHKG 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,473
Number of Sequences: 438
Number of extensions: 5049
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)