Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E13
         (856 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X07109-1|CAA30130.1|  673|Homo sapiens protein ( Human mRNA for ...    34   0.76 
X06318-1|CAA29634.1|  671|Homo sapiens protein ( Human mRNA for ...    34   0.76 
M13975-1|AAA60095.1|  673|Homo sapiens protein kinase C beta-II ...    34   0.76 
BC036472-1|AAH36472.1|  673|Homo sapiens protein kinase C, beta ...    34   0.76 
AC002299-2|AAB97934.1|  496|Homo sapiens Protein kinase C beta (...    34   0.76 
AC002299-1|AAB97933.1|  494|Homo sapiens Protein kinase C beta (...    34   0.76 

>X07109-1|CAA30130.1|  673|Homo sapiens protein ( Human mRNA for
           protein kinase C (PKC) type beta II. ).
          Length = 673

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 193 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 252

Query: 707 XIF 715
             F
Sbjct: 253 NDF 255


>X06318-1|CAA29634.1|  671|Homo sapiens protein ( Human mRNA for
           protein kinase C (PKC) type beta I. ).
          Length = 671

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 193 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 252

Query: 707 XIF 715
             F
Sbjct: 253 NDF 255


>M13975-1|AAA60095.1|  673|Homo sapiens protein kinase C beta-II
           type protein.
          Length = 673

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 193 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 252

Query: 707 XIF 715
             F
Sbjct: 253 NDF 255


>BC036472-1|AAH36472.1|  673|Homo sapiens protein kinase C, beta 1
           protein.
          Length = 673

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 193 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 252

Query: 707 XIF 715
             F
Sbjct: 253 NDF 255


>AC002299-2|AAB97934.1|  496|Homo sapiens Protein kinase C beta (5'
           partial) splice form_ protein.
          Length = 496

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 16  DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 75

Query: 707 XIF 715
             F
Sbjct: 76  NDF 78


>AC002299-1|AAB97933.1|  494|Homo sapiens Protein kinase C beta (5'
           partial) splice form_1 protein.
          Length = 494

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = +2

Query: 542 DTLXKVKVFP---GESKYET-TLQENSWPVWNEDFKFQLKQKEA-KKSSDKIDLQNLVSR 706
           D   K+K+ P    ESK +T T++ +  P WNE F+FQLK+ +  ++ S +I   +L SR
Sbjct: 16  DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSR 75

Query: 707 XIF 715
             F
Sbjct: 76  NDF 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,053,159
Number of Sequences: 237096
Number of extensions: 2251777
Number of successful extensions: 3158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3158
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)