Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E13
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   7.4  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   7.4  
Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical p...    28   9.7  

>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 702  DTKF*RSILSDDFFASFCFN*NLKSSFHTGHEFSCSVVSYLLSPGN-TFTLXKVSMGATQ 526
            DTK  R+I   D+F       ++  +F +G+ +  S  S  LSP N + T+  VS    Q
Sbjct: 4380 DTKMERAIKQRDYFLQQTSADHISETFKSGYNYGISAAS-ALSPQNISTTMRNVSSSVRQ 4438


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 702  DTKF*RSILSDDFFASFCFN*NLKSSFHTGHEFSCSVVSYLLSPGN-TFTLXKVSMGATQ 526
            DTK  R+I   D+F       ++  +F +G+ +  S  S  LSP N + T+  VS    Q
Sbjct: 4372 DTKMERAIKQRDYFLQQTSADHISETFKSGYNYGISAAS-ALSPQNISTTMRNVSSSVRQ 4430


>Z81491-10|CAB04023.3|  282|Caenorhabditis elegans Hypothetical
           protein D1086.6 protein.
          Length = 282

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 YKEFICDSYWRPAPPFLVWIESRPWIP 548
           Y + IC  +W P+  ++ W +S   IP
Sbjct: 58  YTDQICYQFWTPSRDYITWCQSACGIP 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,412
Number of Sequences: 27780
Number of extensions: 347398
Number of successful extensions: 765
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)