Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E12
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +3

Query: 762 LFLGAPPPXEXNKXXPPPXKTXPXSXPXTXTXXXXKXXPPXPPGXGGGXPXXP 920
           L L +PPP       P P    P   P           PP PPG  G  P  P
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPA-PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 PPPPXGXGXFXXXPPPXPP 549
           PPPP G       PPP PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 PPPPXGXGXFXXXPPPXPP 549
           PPPP   G     PPP PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 PPPPXGXGXFXXXPPPXPP 549
           PPPP   G     PPP PP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 919 GXXGXPPPXPGGXGG 875
           G  G PPP PGG GG
Sbjct: 195 GGSGGPPPGPGGFGG 209



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -3

Query: 908 GTXPXPXGGGGXXFXXXXXXGXRXGXGGGFXGGXXXF 798
           G  P P G GG  F      G   G  GGF GG   F
Sbjct: 199 GPPPGPGGFGG--FGGFGGEGHHHGGHGGFGGGPGGF 233


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +1

Query: 811 PPKKPPPXPXLXPKXXXKXKXXPPPPXG 894
           PP  PPP P   P      +  PPPP G
Sbjct: 5   PPGNPPPPPP-PPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 493 PPPPXGXGXFXXXPPPXPP 549
           PPPP G       PPP PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,390
Number of Sequences: 5004
Number of extensions: 14922
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)