Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E11
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   262   5e-71
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.5  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    26   8.1  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    26   8.1  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  262 bits (642), Expect = 5e-71
 Identities = 116/179 (64%), Positives = 149/179 (83%)
 Frame = +2

Query: 224 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 403
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 404 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 583
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 584 IGKPHTVPWQGHRQVWFCNSPADPAPRGTGIVSAPVPXKLLQMAGVQDCYTSARGSTGT 760
           +G PHTVP +   +         PAPRG G+V+APV  + LQ+AG++DCYT +RGST T
Sbjct: 147 LGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKT 205


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 221 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 96
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = -1

Query: 679 HNSSTTRGRISRTVTEPHLP---VTLPRDGVWLSDL-VTPVTSSNW*NRQLSKDNSASNG 512
           H+SS++    S + + P      +T      ++S + VTP +SS+  + ++    +A   
Sbjct: 218 HSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALAL 277

Query: 511 SGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLY 398
           +    A+ HT  N   +V     C+    +   C+FLY
Sbjct: 278 NAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFLY 314


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 699 SFFRWLVYRTATPQLVVQL 755
           S F+WL+  TATP+L+V L
Sbjct: 70  SVFQWLIALTATPRLLVLL 88


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 26/118 (22%), Positives = 47/118 (39%)
 Frame = +2

Query: 398 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 577
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 578 NKIGKPHTVPWQGHRQVWFCNSPADPAPRGTGIVSAPVPXKLLQMAGVQDCYTSARGS 751
                  TV    H++           P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +1

Query: 22  TIGNSL--RFFFFFCCL 66
           TIGNS   R FFF CCL
Sbjct: 233 TIGNSTNWRTFFFLCCL 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,887
Number of Sequences: 5004
Number of extensions: 67392
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)