Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E09
         (887 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    58   1e-08
S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    58   1e-08
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    58   1e-08
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    58   1e-08

>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 31/51 (60%), Positives = 34/51 (66%)
 Frame = -1

Query: 533 MVSKAEXAXVXSXXILVXXXVAVXGEKISTILKXAAVXVEPYWPGXXAXDL 381
           M +KAE A V +  ILV   VAV GEKI+TILK A V VEPYWPG  A  L
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKAL 51



 Score = 31.5 bits (68), Expect = 1.6
 Identities = 21/63 (33%), Positives = 23/63 (36%)
 Frame = -2

Query: 388 KTLEGIXVRDLITXIGFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDXMGF 209
           K LE I V+DLIT IG GV                                 +SDD MGF
Sbjct: 49  KALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 208 GXF 200
           G F
Sbjct: 109 GLF 111


>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 31/51 (60%), Positives = 34/51 (66%)
 Frame = -1

Query: 533 MVSKAEXAXVXSXXILVXXXVAVXGEKISTILKXAAVXVEPYWPGXXAXDL 381
           M +KAE A V +  ILV   VAV GEKI+TILK A V VEPYWPG  A  L
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKAL 51



 Score = 33.9 bits (74), Expect = 0.30
 Identities = 22/63 (34%), Positives = 24/63 (38%)
 Frame = -2

Query: 388 KTLEGIXVRDLITXIGFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDXMGF 209
           K LEGI V+DLIT IG GV                                 +SDD MGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 208 GXF 200
           G F
Sbjct: 109 GLF 111


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 31/51 (60%), Positives = 34/51 (66%)
 Frame = -1

Query: 533 MVSKAEXAXVXSXXILVXXXVAVXGEKISTILKXAAVXVEPYWPGXXAXDL 381
           M +KAE A V +  ILV   VAV GEKI+TILK A V VEPYWPG  A  L
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKAL 51



 Score = 33.9 bits (74), Expect = 0.30
 Identities = 22/63 (34%), Positives = 24/63 (38%)
 Frame = -2

Query: 388 KTLEGIXVRDLITXIGFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDXMGF 209
           K LEGI V+DLIT IG GV                                 +SDD MGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 208 GXF 200
           G F
Sbjct: 109 GLF 111


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 31/51 (60%), Positives = 34/51 (66%)
 Frame = -1

Query: 533 MVSKAEXAXVXSXXILVXXXVAVXGEKISTILKXAAVXVEPYWPGXXAXDL 381
           M +KAE A V +  ILV   VAV GEKI+TILK A V VEPYWPG  A  L
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKAL 51



 Score = 33.9 bits (74), Expect = 0.30
 Identities = 22/63 (34%), Positives = 24/63 (38%)
 Frame = -2

Query: 388 KTLEGIXVRDLITXIGFGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDDXMGF 209
           K LEGI V+DLIT IG GV                                 +SDD MGF
Sbjct: 49  KALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 208 GXF 200
           G F
Sbjct: 109 GLF 111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,130,324
Number of Sequences: 53049
Number of extensions: 245634
Number of successful extensions: 279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4332305172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)