Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E07
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    28   1.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   4.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   4.5  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.9  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    26   7.8  

>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 413 LIRGVWK*KGKMEAYSAAVPSNLDITPNYSYIF---DFENHFIHHNY 544
           +I   WK     E +  A  S +D+ P+Y YI    +   +FI  NY
Sbjct: 85  IIHQTWKTTEVPEGWKGAQQSCIDLHPDYEYILWTDEMSRNFIADNY 131


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 743 WAAYFLNYNTFQIVGSVSH--IHFISIK 666
           +A+YFL YN   +  ++ H  +H ISIK
Sbjct: 23  YASYFLLYNNLPLSSAMVHDGVHLISIK 50


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 393 LTEDCVN*FVVFGNRKEK 446
           L  DC N FVVFGN+  K
Sbjct: 368 LVLDCTNRFVVFGNKTRK 385


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -3

Query: 731 FLNYNTFQIVGSVSHIHFI-SIKDFSSVLTVV-----GFACTIARRI*KPCRFQR--NRK 576
           F  YNT  IVGSV++   + ++ D SS  T V      + CT   +  + C +    NRK
Sbjct: 34  FRRYNTNTIVGSVAYETLVDTVCDVSSNSTFVVKCNRQYPCTRCLKYGEACTYDERDNRK 93

Query: 575 PRSS 564
            R S
Sbjct: 94  KRHS 97


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 685 FILLVLKIFHRYSPWSVLHVQLP 617
           F L  +  FHRY+P ++  VQ P
Sbjct: 537 FFLEFMSFFHRYTPIALYEVQRP 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,150
Number of Sequences: 5004
Number of extensions: 67397
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)