Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E07
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   3.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   4.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   4.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   4.7  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 494 NYSYIFDFENHFIHH 538
           NY  ++  +NH +HH
Sbjct: 269 NYGGVYHLDNHHVHH 283


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 377 SQDFNLAFNNRILLYFYHRRTKLDSRG 297
           S+DF  AF + I   F  RRT    RG
Sbjct: 66  SKDFRFAFKSIICKCFCKRRTNTLRRG 92


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 377 SQDFNLAFNNRILLYFYHRRTKLDSRG 297
           S+DF  AF + I   F  RRT    RG
Sbjct: 514 SKDFRFAFKSIICKCFCKRRTNTLRRG 540


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -3

Query: 431 SKHHELVNTVFSQFKHSSSQDFNLAFNNRILLYF 330
           SK H++++++ + + ++++    L  NN   LY+
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -3

Query: 431 SKHHELVNTVFSQFKHSSSQDFNLAFNNRILLYF 330
           SK H++++++ + + ++++    L  NN   LY+
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = -3

Query: 431 SKHHELVNTVFSQFKHSSSQDFNLAFNNRILLYF 330
           SK H++++++ + + ++++    L  NN   LY+
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYRKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,095
Number of Sequences: 438
Number of extensions: 5028
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)