Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_E06
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    27   3.6  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    27   4.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.4  

>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 581 SEVAKPDRTIKIPGVSPWKLPRALSCSDPCP 673
           + + K D ++ IPGV  +      S  DPCP
Sbjct: 281 TNLPKHDASVHIPGVGDFVTSDVSSLEDPCP 311


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 794 PPFSPTXAPYPVLSS*VNPVERLSPWQXHW 883
           PP     A    LS+ + P+E LSP+Q  W
Sbjct: 163 PPMMKKPAAPNSLSTIIYPIEGLSPYQNKW 192


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 781  LCARTPVQPDRCALSGTIVLSQPGRTTIA 867
            +C +TP+ P  C L G+++     + T++
Sbjct: 1921 MCHKTPILPAICMLCGSVICFNARQNTVS 1949


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,523
Number of Sequences: 5004
Number of extensions: 65757
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)