Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_E01
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 147 9e-36
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 147 1e-35
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 147 1e-35
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 141 6e-34
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 135 5e-32
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 128 4e-30
08_02_0383 - 16539472-16539633,16543044-16543205 33 0.40
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 30 2.1
05_01_0237 + 1782558-1782704,1782715-1782838,1782974-1783137 29 3.7
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 4.9
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 6.5
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 8.6
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 147 bits (357), Expect = 9e-36
Identities = 76/129 (58%), Positives = 89/129 (68%), Gaps = 13/129 (10%)
Frame = +2
Query: 80 MADQTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCP 244
MA+QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 245 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 403
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 404 PCFRXR-GD 427
PCFR + GD
Sbjct: 121 PCFRVKEGD 129
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 420 VEIGDIVTIGECRPLSKTVRFNVLKV 497
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 125 VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 147 bits (356), Expect = 1e-35
Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 15/131 (11%)
Frame = +2
Query: 80 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 244
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 245 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 397
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 398 LSPCFRXR-GD 427
+SPCFR + GD
Sbjct: 121 VSPCFRVKEGD 131
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 420 VEIGDIVTIGECRPLSKTVRFNVLKV 497
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 147 bits (356), Expect = 1e-35
Identities = 76/131 (58%), Positives = 92/131 (70%), Gaps = 15/131 (11%)
Frame = +2
Query: 80 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 244
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 245 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 397
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 398 LSPCFRXR-GD 427
+SPCFR + GD
Sbjct: 121 VSPCFRVKEGD 131
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 420 VEIGDIVTIGECRPLSKTVRFNVLKV 497
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 141 bits (342), Expect = 6e-34
Identities = 66/111 (59%), Positives = 80/111 (72%), Gaps = 5/111 (4%)
Frame = +2
Query: 110 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 277
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 278 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRXR-GD 427
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR + GD
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGD 113
Score = 44.8 bits (101), Expect = 9e-05
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3
Query: 420 VEIGDIVTIGECRPLSKTVRFNVLKV 497
V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 109 VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 135 bits (326), Expect = 5e-32
Identities = 76/146 (52%), Positives = 92/146 (63%), Gaps = 30/146 (20%)
Frame = +2
Query: 80 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 244
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 245 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 361
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 362 ---RFEKRHRNMSVHLSPCFRXR-GD 427
R+EKRH N+ H+SPCFR + GD
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFRVKEGD 146
Score = 45.6 bits (103), Expect = 5e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3
Query: 420 VEIGDIVTIGECRPLSKTVRFNVLKV 497
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 142 VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 128 bits (310), Expect = 4e-30
Identities = 63/100 (63%), Positives = 75/100 (75%), Gaps = 5/100 (5%)
Frame = +2
Query: 80 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCP 244
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 245 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 364
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 278 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVH 397
+ G+V KMQ+++V+ D L + YNR+ KR H
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAH 43
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 29 GNSLRFKLLAFFHLSSKMADQTEKAFQKQATVFLNRKGGMKRKDMRH 169
GN + + F LS+K+ D+ +KA A F N+ GM+ +D H
Sbjct: 161 GNKILWTFRGRFRLSTKIQDKVQKADVFLAAEFHNKIYGMEFQDQSH 207
>05_01_0237 + 1782558-1782704,1782715-1782838,1782974-1783137
Length = 144
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 439 TISPISTXPEARRQMHGHIPVPFLEPIVFG 350
T++P+ + P RR + GH+P P L FG
Sbjct: 101 TVAPLVSQPSWRRCLGGHVPSPSLPSSWFG 130
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 232 VNVGTLNRLSGSFEA*TDILMVTHVLPLHATFPVQENGGLFLKR 101
++ G L ++SGSF+ T + + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 IEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 358
+ GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 169 VTHVLPLHATFPVQENGGLFLKRFLCL 89
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,509,976
Number of Sequences: 37544
Number of extensions: 301883
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -