Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D24
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446...    55   9e-08
07_01_0873 - 7257016-7257957,7260083-7260262                           46   5e-05
03_06_0445 - 33982018-33982965,33984308-33984463                       46   5e-05
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806...    33   0.30 
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783...    29   3.7  
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166...    28   8.5  

>03_05_0889 +
           28543106-28543354,28544379-28544465,28544548-28544604,
           28544704-28544781
          Length = 156

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 23/45 (51%), Positives = 29/45 (64%)
 Frame = +2

Query: 284 EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKEN 418
           E   V ++C KC    + Y T QLRSADEGQTVFY C  C+++ N
Sbjct: 109 ERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFN 153


>07_01_0873 - 7257016-7257957,7260083-7260262
          Length = 373

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 281 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
           P+    + KC +CG  + +Y  LQ RSADE  T F TC+ C
Sbjct: 326 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 366


>03_06_0445 - 33982018-33982965,33984308-33984463
          Length = 367

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 281 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
           P+    + KC +CG  + +Y  LQ RSADE  T F TC+ C
Sbjct: 320 PKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNC 360


>02_05_0276 +
           27378994-27380094,27380185-27380250,27380586-27380660,
           27381927-27382025,27382353-27382436,27382519-27382868,
           27383190-27383406,27383579-27383658,27383760-27383850,
           27386544-27386672,27388771-27388858,27389967-27390097
          Length = 836

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 290 PVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIK 400
           P     C +C      Y  +Q+RSADE  + FY C +
Sbjct: 790 PKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCR 826


>07_03_0724 +
           20975942-20976867,20977397-20977476,20977976-20978370,
           20988410-20989444
          Length = 811

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 321 PHLA-HFLSTTGPSGPSVCSIFSFV 250
           PH+A HF + TG   P VC  FSF+
Sbjct: 504 PHMARHFTNATGRGMPLVCPTFSFL 528


>01_03_0288 -
           14714953-14715253,14716317-14716402,14716573-14716686,
           14716771-14717140,14717224-14717357,14717512-14717617,
           14717733-14717854,14718125-14718231,14718522-14718622,
           14719007-14719169,14719559-14719614,14720833-14721152
          Length = 659

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 65  IMSTESPLSTSTAFCARCGSILPLLQEFGSV 157
           I +  SP  T  +F     S+LPLL EFG +
Sbjct: 224 IQNNTSPQDTLESFSDSLSSMLPLLSEFGHI 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,197
Number of Sequences: 37544
Number of extensions: 284044
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)