Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_D24
(872 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 138 9e-33
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 40 0.006
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 38 0.014
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 38 0.014
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 38 0.014
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 38 0.014
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 33 0.39
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 33 0.39
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 31 1.6
BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p pro... 30 4.8
AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA... 30 4.8
U36792-1|AAC46928.1| 723|Drosophila melanogaster DHR96 protein. 29 8.4
AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p pro... 29 8.4
AY051486-1|AAK92910.1| 723|Drosophila melanogaster GH14435p pro... 29 8.4
AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-P... 29 8.4
AE014297-3687|AAF56379.1| 723|Drosophila melanogaster CG11783-P... 29 8.4
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 138 bits (334), Expect = 9e-33
Identities = 65/113 (57%), Positives = 80/113 (70%), Gaps = 3/113 (2%)
Frame = +2
Query: 89 STSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNEN 262
S FC CGSILP LQ G+V CY CK ++ D YS K ++TIHFNT S + N
Sbjct: 5 SNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRT 64
Query: 263 ILHTDGP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKEN 418
++ +GPVVERKC KC +D+MSYATLQLRSADEGQTVF+TC+KCK+KE+
Sbjct: 65 KRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKES 117
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 39.5 bits (88), Expect = 0.006
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +2
Query: 104 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQY-TIHFNTISVITNENILHTDG 280
FC CG+IL +++E + +TC SK++ + T F + + +
Sbjct: 4 FCPSCGNIL-IIEEDTNCHRFTCNT---CPYISKIRRKISTKTFPRLKEVDHVLGGKAAW 59
Query: 281 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKEN 418
+ +C CG+ R + +Q RSADE T FY C C ++ N
Sbjct: 60 ENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKC--CNHECN 103
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.014
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 403
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 33.5 bits (73), Expect = 0.39
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = +2
Query: 74 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 247
TE P FC C ++L P + + Y C+ Y+ S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKI-MHEIDE 68
Query: 248 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTC 394
+T+ P P E C KC + + Q R A+E ++Y C
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVC 118
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 33.5 bits (73), Expect = 0.39
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Frame = +2
Query: 74 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 247
TE P FC C ++L P + + Y C+ Y+ + S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-MHEIDE 68
Query: 248 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTC 394
+T+ P P E C KC + + Q R A+E ++Y C
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVC 118
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 31.5 bits (68), Expect = 1.6
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Frame = +2
Query: 74 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 247
TE P FC C ++L P + + Y C+ Y+ + S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-MHEIDE 68
Query: 248 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTC 394
+T+ P P E C KC + Q R A+E ++Y C
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVC 118
>BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p
protein.
Length = 390
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 409
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 208 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 243
>AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA
protein.
Length = 2171
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +2
Query: 305 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 409
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 309 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 344
>U36792-1|AAC46928.1| 723|Drosophila melanogaster DHR96 protein.
Length = 723
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 253
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
>AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p
protein.
Length = 664
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 227 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 394
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 395 IKCKYKEN 418
+ C +++
Sbjct: 510 LLCNAEKS 517
>AY051486-1|AAK92910.1| 723|Drosophila melanogaster GH14435p
protein.
Length = 723
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 253
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
>AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-PA
protein.
Length = 664
Score = 29.1 bits (62), Expect = 8.4
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 227 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 394
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 395 IKCKYKEN 418
+ C +++
Sbjct: 510 LLCNAEKS 517
>AE014297-3687|AAF56379.1| 723|Drosophila melanogaster CG11783-PA
protein.
Length = 723
Score = 29.1 bits (62), Expect = 8.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 253
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,162,656
Number of Sequences: 53049
Number of extensions: 538194
Number of successful extensions: 1032
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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