Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D21
         (1064 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ000517-1|CAA04154.1|  892|Homo sapiens spinocerebellar ataxia ...    33   2.3  
AF032105-1|AAC39765.1|  892|Homo sapiens ataxin-7 protein.             33   2.3  
AF032103-1|AAC19163.1|  789|Homo sapiens ataxin-7 protein.             33   2.3  

>AJ000517-1|CAA04154.1|  892|Homo sapiens spinocerebellar ataxia 7
           protein.
          Length = 892

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +2

Query: 89  CRXGMSQIAERHRN*KTSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSS 268
           C     Q++    +  T  GL    SS ++   KP++   +++LRP+ + +  +TN  ++
Sbjct: 639 CSMQSRQVSSSSSSPSTPSGLSSVPSSPMS--RKPQKLKSSKSLRPKES-SGNSTNCQNA 695

Query: 269 QSVGSGGSAKR 301
            S  SGGS K+
Sbjct: 696 SSSTSGGSGKK 706


>AF032105-1|AAC39765.1|  892|Homo sapiens ataxin-7 protein.
          Length = 892

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +2

Query: 89  CRXGMSQIAERHRN*KTSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSS 268
           C     Q++    +  T  GL    SS ++   KP++   +++LRP+ + +  +TN  ++
Sbjct: 639 CSMQSRQVSSSSSSPSTPSGLSSVPSSPMS--RKPQKLKSSKSLRPKES-SGNSTNCQNA 695

Query: 269 QSVGSGGSAKR 301
            S  SGGS K+
Sbjct: 696 SSSTSGGSGKK 706


>AF032103-1|AAC19163.1|  789|Homo sapiens ataxin-7 protein.
          Length = 789

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 20/71 (28%), Positives = 37/71 (52%)
 Frame = +2

Query: 89  CRXGMSQIAERHRN*KTSDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSS 268
           C     Q++    +  T  GL    SS ++   KP++   +++LRP+ + +  +TN  ++
Sbjct: 536 CSMQSRQVSSSSSSPSTPSGLSSVPSSPMS--RKPQKLKSSKSLRPKES-SGNSTNCQNA 592

Query: 269 QSVGSGGSAKR 301
            S  SGGS K+
Sbjct: 593 SSSTSGGSGKK 603


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,688,434
Number of Sequences: 237096
Number of extensions: 513846
Number of successful extensions: 1285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14539514738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)