Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_D16
(970 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 40 0.004
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.34
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 32 0.60
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.79
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.2
06_01_0807 - 6069998-6071326 29 4.2
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 26 5.1
11_03_0095 - 9905323-9905793 29 5.6
08_02_0193 - 14073103-14073246,14073332-14073481,14073571-140736... 29 5.6
05_03_0665 - 16774043-16774522 29 5.6
05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621 29 5.6
02_02_0240 + 8196140-8198248,8198381-8198650 29 5.6
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 9.7
04_04_1695 + 35433975-35437040 28 9.7
01_01_0929 - 7344911-7345978 28 9.7
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/36 (47%), Positives = 17/36 (47%)
Frame = -2
Query: 960 GXPPPPPGGGXXXPXPPGXXKXXXXXXGXAQRGGGG 853
G PPPPP P PPG G A RGGGG
Sbjct: 348 GPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG 383
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 612 PPXXGGGXPPPPXGXGXXXVLPXVPPPA 695
PP G G PPPP G P PPPA
Sbjct: 363 PPGPGPGPPPPPGAAGRGGGGP--PPPA 388
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Frame = +2
Query: 854 PPPPRCAXPXXXXXXXXXPGGXGXXXPPP----GGGGGXPXXP 970
PPPP A P P G G PPP G GGG P P
Sbjct: 350 PPPPPPAAP-----AAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 33.1 bits (72), Expect = 0.34
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -1
Query: 697 PAGGGTXGXTXXXPXPXGGGGXPPPXXGG 611
P GGG G P GGGG PP GG
Sbjct: 109 PGGGGGGGPPSLPPGAGGGGGARPPAPGG 137
Score = 31.1 bits (67), Expect = 1.4
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = -1
Query: 724 GXXXXXGXXPAGGGTXGXTXXXPXPXGGGGXPPPXXGG 611
G G P GGG G P GGGG P GG
Sbjct: 164 GRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGG 201
Score = 29.9 bits (64), Expect = 3.2
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -3
Query: 677 GEXXXPTPXXGGGGXXPPXPGGG 609
G P GGGG PP PGGG
Sbjct: 116 GPPSLPPGAGGGGGARPPAPGGG 138
Score = 29.5 bits (63), Expect = 4.2
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -1
Query: 706 GXXPAGGGTXGXTXXXPXPXGGGGXPPPXXGG 611
G P GGG P P GGGG PP GG
Sbjct: 89 GLPPGGGGA-------PGPLGGGGARPPGGGG 113
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 697 PAGGGTXGXTXXXPXPXGGGGXPPPXXGG 611
P GGG G P GGGG P GG
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGG 188
Score = 28.3 bits (60), Expect = 9.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 920 PXPXGXXKXPXXXRXGHNGGGGGXXXXPXGGGPXXXPR 807
P G P G GGGG P GGG PR
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPR 145
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 32.3 bits (70), Expect = 0.60
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +3
Query: 603 LFSPPXXGGGXPPPPXGXGXXXVLPXVPPPAGXXP 707
L PP G PPPP G P PPP G P
Sbjct: 918 LSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGSLP 952
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.9 bits (69), Expect = 0.79
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 612 PPXXGGGXPPPPXGXGXXXVLPXVPPPAG 698
PP G G PPPP G +P PPP G
Sbjct: 1101 PPSIGAGAPPPPPPPGGITGVPP-PPPIG 1128
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 969 GXXGXPPPPPGGGXXXPXPPG 907
G G PPPPPG G P PPG
Sbjct: 1212 GVPGGPPPPPG-GRGLPAPPG 1231
Score = 30.3 bits (65), Expect = 2.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 613 PPGXGGXXPPPPXXGVGXXXSP 678
P G GG PPPP G+G +P
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAP 1163
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 610 PPPGXGGXXPPPPXXGVGXXXSP 678
PP G G PPPP G+G +P
Sbjct: 1114 PPGGITGVPPPPPIGGLGGHQAP 1136
Score = 29.1 bits (62), Expect = 5.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 969 GXXGXPPPPPGGGXXXPXPP 910
G G PPPPP GG P P
Sbjct: 1144 GIGGVPPPPPVGGLGGPPAP 1163
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 954 PPPPPGGGXXXPXPP 910
PPPPPGG P PP
Sbjct: 1111 PPPPPGGITGVPPPP 1125
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -3
Query: 680 PGEXXXPTPXXGGGGXXPPXPGGGKKXXPXRXP 582
P + P P G PP P GGKK P P
Sbjct: 349 PAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -2
Query: 960 GXPPPPPGGGXXXPXPPGXXKXXXXXXGXAQRGG 859
G PPPPP G P PP ++GG
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGG 376
Score = 29.5 bits (63), Expect = 4.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 612 PPXXGGGXPPPPXGXGXXXVLPXVPPPAG 698
PP G PPPP G P PPP G
Sbjct: 356 PPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 969 GXXGXPPPPPGGGXXXPXPP 910
G PPPPPGG P PP
Sbjct: 361 GPSPPPPPPPGGKKGGPPPP 380
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 612 PPXXGGGXPPPPXGXGXXXVLPXVPPPAG 698
PP G PPPP G P PPP G
Sbjct: 346 PPPPAKGPPPPPPPKGPSP--PPPPPPGG 372
>06_01_0807 - 6069998-6071326
Length = 442
Score = 29.5 bits (63), Expect = 4.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 893 PXXXRXGHNGGGGGXXXXPXGGG 825
P R +NGGGGG P GGG
Sbjct: 33 PNESRDKNNGGGGGGFMAPSGGG 55
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 26.2 bits (55), Expect(2) = 5.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 823 GPPPXGXXXXPPPPP 867
GPPP PPPPP
Sbjct: 26 GPPPPPPSDPPPPPP 40
Score = 21.4 bits (43), Expect(2) = 5.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 853 PPPPPLCP 876
PPPPPL P
Sbjct: 65 PPPPPLPP 72
>11_03_0095 - 9905323-9905793
Length = 156
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -1
Query: 706 GXXPAGGGTXGXTXXXPXPXGGGGXPPP 623
G AGGG G GGGG PPP
Sbjct: 85 GREEAGGGADGMERRRRGLGGGGGSPPP 112
>08_02_0193 -
14073103-14073246,14073332-14073481,14073571-14073640,
14073900-14074021,14074260-14074395,14074492-14074967
Length = 365
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 823 GPPPXGXXXXPPPPPLC 873
GP P PPPPPLC
Sbjct: 42 GPSPVAPYFAPPPPPLC 58
>05_03_0665 - 16774043-16774522
Length = 159
Score = 29.1 bits (62), Expect = 5.6
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 854 PPPPRCAXPXXXXXXXXXPGGXGXXXPPPGGGGG 955
PPPPR A P GG G GGG G
Sbjct: 76 PPPPRLALPPPPGRRDGYLGGGGAGGGGGGGGSG 109
>05_02_0161 + 7199005-7199505,7200118-7200378,7201532-7201621
Length = 283
Score = 29.1 bits (62), Expect = 5.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 610 PPPGXGGXXPPPPXXGVGXXXSPG 681
PPP GG PPPP G G S G
Sbjct: 52 PPPDDGGEFPPPPDDG-GEGVSEG 74
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 954 PPPPPGGGXXXPXPP 910
PPPPP GG P PP
Sbjct: 22 PPPPPPGGGAKPEPP 36
Score = 29.1 bits (62), Expect = 5.6
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 954 PPPPPGGGXXXPXPP 910
PPPPPGGG PP
Sbjct: 23 PPPPPGGGAKPEPPP 37
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 9.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 612 PPXXGGGXPPPPXGXGXXXVLPXVPPPAGXXP 707
PP G PPPP G P PP G P
Sbjct: 616 PPPRPPGAPPPPPPPGKPGGPPPPPPRPGSLP 647
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 954 PPPPPGGGXXXPXPPG 907
PPPPPG P PPG
Sbjct: 228 PPPPPGQTVIMPRPPG 243
>01_01_0929 - 7344911-7345978
Length = 355
Score = 28.3 bits (60), Expect = 9.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 826 PPPXGXXXXPPPPPLCPXL 882
PP PPPPP CP L
Sbjct: 26 PPSKTRRPPPPPPPFCPHL 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,349
Number of Sequences: 37544
Number of extensions: 389328
Number of successful extensions: 5065
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4425
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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