Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D14
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    29   5.6  
AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical...    28   7.4  

>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 484 LSNGLSSTSTLESVRSMRVLRSKFNTNCGGVCVQF 380
           + NG S T  + S +S  V+  K N NC  +CV +
Sbjct: 193 MQNGSSQTKIVASEKSASVINEKVNHNC-NICVVY 226


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 484 LSNGLSSTSTLESVRSMRVLRSKFNTNCGGVCVQF 380
           + NG S T  + S +S  V+  K N NC  +CV +
Sbjct: 193 MQNGSSQTKIVASEKSASVINEKVNHNC-NICVVY 226


>AC024826-17|AAF60789.1|  662|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.14 protein.
          Length = 662

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +2

Query: 269 RAH*ISVCNPVLKYYSYNSKYLVSSRTMKT*ECLLKKKLYADTATVRVEFAS*YTHTTNR 448
           + H  +VC     Y+S    +  S    K   C   +K +A  AT++V      THT  R
Sbjct: 102 KRHICTVCGKGFSYFSILESHKRSHTGEKPYNCHFCQKTFAQKATLQVHER---THTGER 158

Query: 449 -FKSASGT*TIGQYETFSI*HHPTIH 523
            +K      T  QY T ++ H  + H
Sbjct: 159 PYKCRYCEKTFAQYGTKTV-HEKSAH 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,212
Number of Sequences: 27780
Number of extensions: 342584
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)