Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D14
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.51 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   8.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   8.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 MNTPYNTQLLKIICKQVRHTSALYR 52
           +N   + Q++  +CK +  TSALYR
Sbjct: 15  INVLLHGQVICFVCKDITSTSALYR 39


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 243 TIFTHDFFQSLIKVLYQYS-*VAHLIGN 163
           TIFT  +   +I ++Y YS  V+H++ +
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNH 241


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 546 NVFNNGAIHADFFDATLLSCRSVHMQNISKNMQYISKEDRKITL 677
           +VF+        FD+TLL C    ++N+   +   + +    TL
Sbjct: 17  DVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 60


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 546 NVFNNGAIHADFFDATLLSCRSVHMQNISKNMQYISKEDRKITL 677
           +VF+        FD+TLL C    ++N+   +   + +    TL
Sbjct: 33  DVFDQLKTKKTSFDSTLLDCIQSGIENLDSGVGIYAPDAEAYTL 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,818
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)