Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D13
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.68 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = +2

Query: 59  STGNTQRLPIIS*SEARILASPKVKSD*RGSVSLSYFFRTIPIKKMRKRKSLKLNEEDSD 238
           +TG T  LP  S +         V +    + +++    TIP +++RKR+  + + E +D
Sbjct: 221 TTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRR--QNDGEGAD 278

Query: 239 GSGQGAEPEEFQD 277
                 E EE +D
Sbjct: 279 DRDDDEENEEEED 291


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 290 WTPDADSNEPASRTGRKRVSKAPVNNT 370
           W  D+D  E ++R   K   K P N T
Sbjct: 39  WADDSDEEELSARPSFKTFDKGPKNYT 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,854
Number of Sequences: 438
Number of extensions: 4510
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)