Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D11
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   1.5  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   4.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.0  

>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 626 NSITNFTNKAFFSLHSSCGLSKLIN-VSYHVWIQLTLXKGRSAAATKPKW 480
           N +T   N+   SLH SCGLS     V Y+ ++  T    R+  A +P+W
Sbjct: 647 NYVTMKDNQVV-SLHPSCGLSVTPEWVVYNEFVLTTKSFIRNVTAIRPEW 695


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +2

Query: 359 IMSXVLFFSIXTSAV----WMVCFFFFAVALGKGV 451
           I++ VL F + T AV     M+CFFF+ ++   G+
Sbjct: 111 ILAQVLLFFMTTGAVRRYSMMLCFFFWRISYDAGI 145


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 371 VLFFSIXTSAVWMVCFFFFAVAL 439
           +L F+    A WM  F++FA++L
Sbjct: 289 ILSFNFWNPAGWMTFFYYFAISL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,043
Number of Sequences: 5004
Number of extensions: 36636
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)