Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_D11
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5 ... 44 1e-04
AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 li... 44 1e-04
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 42 4e-04
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 42 4e-04
AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 l... 42 7e-04
AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 li... 40 0.002
AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4 ... 40 0.002
AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2 ... 40 0.002
AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2 ... 40 0.002
AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4 ... 40 0.002
AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 li... 40 0.002
X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1 prot... 36 0.028
Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical pr... 35 0.065
AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1 ... 35 0.065
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 33 0.35
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 33 0.35
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu... 28 9.8
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu... 28 9.8
>AF005372-1|AAB81030.1| 225|Caenorhabditis elegans histone H1.5
protein.
Length = 225
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI K+IT KY + + GV+ +VQT G+GA
Sbjct: 46 TEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGIGA 105
Query: 182 AGSFKLAPIKEK 147
G F+LA + EK
Sbjct: 106 NGRFRLA-VAEK 116
>AF003145-1|AAB57720.1| 225|Caenorhabditis elegans Histone h1 like
protein 5 protein.
Length = 225
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI K+IT KY + + GV+ +VQT G+GA
Sbjct: 46 TEAVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGIGA 105
Query: 182 AGSFKLAPIKEK 147
G F+LA + EK
Sbjct: 106 NGRFRLA-VAEK 116
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 338 LKTRKGVSLYAIKKYITEKYRVDAD--XXXXXXXXXXXNGVIDGAIVQTKGVGAAGSFKL 165
LK RKG S AI KYIT+ Y V GV+ A+VQ+ G GA+G F++
Sbjct: 52 LKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGTGASGRFRV 111
Query: 164 APIKEKKKQTPL 129
K + P+
Sbjct: 112 TEKKAAAAKKPV 123
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 42.3 bits (95), Expect = 4e-04
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 338 LKTRKGVSLYAIKKYITEKYRVDAD--XXXXXXXXXXXNGVIDGAIVQTKGVGAAGSFKL 165
LK RKG S AI KYIT+ Y V GV+ A+VQ+ G GA+G F++
Sbjct: 52 LKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGTGASGRFRV 111
Query: 164 APIKEKKKQTPL 129
K + P+
Sbjct: 112 TEKKAAAAKKPV 123
>AF016425-12|AAB65336.1| 190|Caenorhabditis elegans Histone h1 like
protein 6 protein.
Length = 190
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI KYIT Y++ GV A+VQT G GA
Sbjct: 43 TAAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGVASKALVQTVGTGA 102
Query: 182 AGSFKLA 162
G F++A
Sbjct: 103 TGRFRVA 109
>AF068708-3|AAC17754.1| 253|Caenorhabditis elegans Histone h1 like
protein 4 protein.
Length = 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + +K RKG S AI KYIT KY + A+ G+ A VQ G GA
Sbjct: 60 TEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGA 119
Query: 182 AGSFKLA 162
G F+LA
Sbjct: 120 NGRFRLA 126
>AF026521-1|AAB82588.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + +K RKG S AI KYIT KY + A+ G+ A VQ G GA
Sbjct: 60 TEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGA 119
Query: 182 AGSFKLA 162
G F+LA
Sbjct: 120 NGRFRLA 126
>AF017812-1|AAB70559.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI KYIT Y+V GV A+VQ+ G GA
Sbjct: 46 TAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGA 105
Query: 182 AGSFKLA 162
+G F++A
Sbjct: 106 SGRFRVA 112
>AF017811-1|AAB70666.1| 191|Caenorhabditis elegans histone H1.2
protein.
Length = 191
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI KYIT Y+V GV A+VQ+ G GA
Sbjct: 46 TAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGA 105
Query: 182 AGSFKLA 162
+G F++A
Sbjct: 106 SGRFRVA 112
>AF005371-1|AAB81029.1| 253|Caenorhabditis elegans histone H1.4
protein.
Length = 253
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + +K RKG S AI KYIT KY + A+ G+ A VQ G GA
Sbjct: 60 TEAISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGA 119
Query: 182 AGSFKLA 162
G F+LA
Sbjct: 120 NGRFRLA 126
>AC084197-2|AAM44399.1| 241|Caenorhabditis elegans Histone h1 like
protein 2, isoforma protein.
Length = 241
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 356 TRLSAXLKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGA 183
T + LK RKG S AI KYIT Y+V GV A+VQ+ G GA
Sbjct: 96 TAAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGA 155
Query: 182 AGSFKLA 162
+G F++A
Sbjct: 156 SGRFRVA 162
>X53277-1|CAA37372.1| 208|Caenorhabditis elegans histone H1
protein.
Length = 208
Score = 36.3 bits (80), Expect = 0.028
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 338 LKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGAAGSFKL 165
LK RKG S AI K+I++ Y++ + GV A+VQ +G GA G F++
Sbjct: 52 LKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSGANGRFRV 111
Query: 164 APIKEKKKQTP 132
P K + P
Sbjct: 112 -PEKAAAAKKP 121
>Z79603-3|CAB01892.1| 208|Caenorhabditis elegans Hypothetical
protein M163.3 protein.
Length = 208
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 338 LKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGAAGSFKL 165
LK RKG S AI K+I++ Y++ + GV A+VQ G GA G F++
Sbjct: 52 LKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGSGANGRFRV 111
Query: 164 APIKEKKKQTP 132
P K + P
Sbjct: 112 -PEKAAAAKKP 121
>AF017810-1|AAB70665.1| 208|Caenorhabditis elegans histone H1.1
protein.
Length = 208
Score = 35.1 bits (77), Expect = 0.065
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 338 LKTRKGVSLYAIKKYITEKYRV--DADXXXXXXXXXXXNGVIDGAIVQTKGVGAAGSFKL 165
LK RKG S AI K+I++ Y++ + GV A+VQ G GA G F++
Sbjct: 52 LKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGSGANGRFRV 111
Query: 164 APIKEKKKQTP 132
P K + P
Sbjct: 112 -PEKAAAAKKP 121
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 323 GVSLYAIKKYITEKYRVDADXXXXXXXXXXXN--GVIDGAIVQTKGVGAAGSFKLAPIKE 150
G S AI KYI + Y V + V G I QT+G GA GSF++ E
Sbjct: 56 GSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRGHGATGSFRMGKECE 115
Query: 149 KKKQ 138
K Q
Sbjct: 116 KNLQ 119
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 323 GVSLYAIKKYITEKYRVDADXXXXXXXXXXXN--GVIDGAIVQTKGVGAAGSFKLAPIKE 150
G S AI KYI + Y V + V G I QT+G GA GSF++ E
Sbjct: 56 GSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRGHGATGSFRMGKECE 115
Query: 149 KKKQ 138
K Q
Sbjct: 116 KNLQ 119
>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform a
protein.
Length = 1081
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 436 SDSKEEKTNHPNRRSXDREEK 374
+D +EE HP RRS ++ EK
Sbjct: 809 NDEEEEPVRHPKRRSDEKREK 829
>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
glutamine tract) toxicityenhancer protein 1, isoform b
protein.
Length = 1647
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 436 SDSKEEKTNHPNRRSXDREEK 374
+D +EE HP RRS ++ EK
Sbjct: 809 NDEEEEPVRHPKRRSDEKREK 829
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,333
Number of Sequences: 27780
Number of extensions: 208678
Number of successful extensions: 473
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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