Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_D09
(935 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.076
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.076
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.41
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.41
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 5.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 5.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 8.8
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 8.8
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 33.5 bits (73), Expect = 0.044
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = +3
Query: 492 PPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLPXXPGXXXPXXP 671
PPP+PA PP K P P P P PP+P P P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP----PKVPPPP 205
Query: 672 XRQTP 686
Q P
Sbjct: 206 LSQAP 210
Score = 25.8 bits (54), Expect = 8.8
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = +3
Query: 486 TXPPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLPXXPGXXXPX 665
T PP P+ PP P P K P P PP Q P P P
Sbjct: 141 TSAPPRPSIPPP--SPASAPPIPSK------APPIPSSLPPPAQ---PAAPVKSPPSAPS 189
Query: 666 XPXRQTPXPQK 698
P P P K
Sbjct: 190 LPSAVPPMPPK 200
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.076
Identities = 24/61 (39%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 670 GXKGXXXPGXXGRGGFXXWXG-GXXWGGXXGXPPXXVXFXGXGXXPFFFFXGGXXAGFGG 494
G G PG G GGF + G G GG G F G G F GG GFGG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEG-GPGGF----GGGPGGFGG 249
Query: 493 G 491
G
Sbjct: 250 G 250
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.7 bits (71), Expect = 0.076
Identities = 21/69 (30%), Positives = 22/69 (31%)
Frame = +3
Query: 486 TXPPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLPXXPGXXXPX 665
T P P P PP P + G P PP PP PPLP P
Sbjct: 414 TPPVPTPPSLPPSAPPS--LPPSAPPSLPMGAPAAPPL--PPSAPIAPPLPAGMPAAPPL 469
Query: 666 XPXRQTPXP 692
P P P
Sbjct: 470 PPAAPAPPP 478
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/72 (27%), Positives = 22/72 (30%)
Frame = +3
Query: 471 GGXXXTXPPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLPXXPG 650
G + PPP P PP G P P + P PP P PPL
Sbjct: 330 GSSNSSLPPPPP---PPRSNAAGSIPLPPQGR--SAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 651 XXXPXXPXRQTP 686
P P P
Sbjct: 385 VSNPPAPPPAIP 396
Score = 29.1 bits (62), Expect = 0.94
Identities = 13/43 (30%), Positives = 15/43 (34%)
Frame = +2
Query: 575 GRXPPPXPXAAPXPXXKXPPPSXPXXXXPFXPXAANPXAXKRP 703
GR PPP + PPP+ P P P N P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +3
Query: 492 PPPNPAXXPPXKKKKGXXPXPXK-XTXXGGXPXXPPXXXPPXQXXXPP 632
PPP P PP P P + G PP P Q PP
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.41
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 492 PPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLPXXP 647
PPP PA P P P GG P PP PP P P
Sbjct: 733 PPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 584 PPPXPXAAPXPXXKXPPPSXPXXXXPFXPXAANPXAXKRP 703
PPP P + P P P P+ P P A++ + P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Frame = +3
Query: 495 PPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXPPLP-XXPGXXXPXXP 671
P +P PP + + P T P PP PP PP+P P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPT-----PPPPPMSVPP-PPSAPPMPAGPPSAPPPPLP 1736
Query: 672 XRQTP 686
P
Sbjct: 1737 ASSAP 1741
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 PPXKKKKGXX-PXPXKXTXXGGXPXXPPXXXPPXQXXXPP-LPXXPGXXXPXXPXRQTP 686
PP K G P P G PP P + PP + PG P P P
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 268
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 575 GRXPPPXPXAAPXPXXKXPPPSXP 646
G PPP P P + PPP P
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 8.8
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +3
Query: 492 PPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPP---XQXXXPPLPXXPGXXXP 662
P P+ A P G P P G P PP PP PP+P P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAA--GVPPVPPPSEAPPVPKPSVGVPPVP--PPSTAP 1217
Query: 663 XXPXRQTPXP 692
P P
Sbjct: 1218 PVPTPSAGLP 1227
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 8.8
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = -3
Query: 684 GFAAXGXKGXXXXGXEGGGXLXFGXGAAXGXGGGXRPPXVXXXXAGGXXPFFFXGGGXXR 505
G A G +G G GG FG + G GGG R G F G R
Sbjct: 133 GPAGRGGRGGFRGG-RGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191
Query: 504 G 502
G
Sbjct: 192 G 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.141 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,749
Number of Sequences: 5004
Number of extensions: 13123
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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