Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D09
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.046

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.046
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 492 PPPNPAXXPPXKKKKGXXPXPXKXTXXGGXPXXPPXXXPPXQXXXP 629
           P P+P    P   ++G  P P +    GG P  PP   P      P
Sbjct: 23  PQPSP-HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/38 (28%), Positives = 14/38 (36%)
 Frame = +2

Query: 572 GGRXPPPXPXAAPXPXXKXPPPSXPXXXXPFXPXAANP 685
           G   P P P  +P    +  PP+      P  P  A P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/40 (27%), Positives = 12/40 (30%)
 Frame = +3

Query: 582 PXXPPXXXPPXQXXXPPLPXXPGXXXPXXPXRQTPXPQKG 701
           P  P    PP     PP    PG      P +    P  G
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,848
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)