Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP08_F_D07
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...   113   2e-26
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    70   4e-13
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    27   2.7  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    27   4.7  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   4.7  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   6.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.1  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   8.1  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score =  113 bits (273), Expect = 2e-26
 Identities = 53/120 (44%), Positives = 81/120 (67%), Gaps = 4/120 (3%)
 Frame = +3

Query: 195 NQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFL 374
           ++  + I  +S  +V FV+ +T L+VANS+RRV +AE PT+AID V++  N++V+ DEFL
Sbjct: 3   SETHITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFL 62

Query: 375 AHRIGLIPLISDDVVDK----IRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
           AHR+G+IPL S ++ +     + Y+R+C C  +C +CSVE  L+ KCT E T  +   DL
Sbjct: 63  AHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKCTGEGTMEIYARDL 122



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 628 LIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
           LI KLRK QE+ LR  AKKG  KEHAKW+P
Sbjct: 144 LICKLRKEQEISLRCIAKKGIAKEHAKWSP 173



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +2

Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLY----PKPDEWPKSEPTELXEDQYEAD-F 844
           KK + K      PT+ V+FEYDP N ++HT Y        EWPKS+  +  E   E + F
Sbjct: 161 KKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEPPREGEPF 220

Query: 845 TXEAXPNXXF 874
             +  P   +
Sbjct: 221 NFQEEPRRFY 230


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
 Frame = +3

Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
           V IT L  E + F +   + S+AN+ RR+ IAE PT+A ++V +  N++++ DE L+HRI
Sbjct: 48  VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107

Query: 387 GLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 503
           GL+P+ +D D+    ++             +V F+L+ KC
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKC 147



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +1

Query: 622 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
           +I++ KLR GQE+ L A+A  G G++HAK++P
Sbjct: 197 DIVVAKLRPGQEIDLEAHAILGIGQDHAKFSP 228


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 475 LHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELASN 335
           L S QKST   ++   +L+ + +  +G+   RC  +S L  + L  N
Sbjct: 74  LSSNQKSTSKSNQMIKLLNNSLAHNNGLPSQRCNHDSKLVYMSLVQN 120


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +3

Query: 180 KMPYANQPSVHITELSDENVKFVVED 257
           + P A+ P+++  + + EN++ ++ED
Sbjct: 83  RQPIADVPAIYFVQPTQENIELIIED 108


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 758 LYYQGHIQRTHQQSGFHFACSFPKPFFA 675
           LYY G     +   G H   + PKPFFA
Sbjct: 449 LYYNGFYIPLNSIFGLHSLMATPKPFFA 476


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 548 RFQISSCYMSCLFICA 501
           RF +S CY++CL  C+
Sbjct: 181 RFPVSECYLACLKACS 196


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
 Frame = -3

Query: 565 TTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQ---KSTHMQSREYLILSTTSSDMSG 395
           TT  SL   S   + L  SS+  +S  +S+  S      ST+  +      S TSS +S 
Sbjct: 124 TTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSS 183

Query: 394 MRPMRCAKNSSLKTVELASNCTQSMAIVGVSA 299
                 A +SSL +  L S  + +     +S+
Sbjct: 184 TAASNSATSSSLASSSLNSTTSATATSSSLSS 215


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 276 NSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMC 452
           NS+  V  A+ P+M ID + L  N    + +     + L P I++ D V       D   
Sbjct: 182 NSLVCVSFAQNPSMLIDSIDLVRNMPDFTKK--TDMLNLFPRIAEHDAVLSTSLHADPQF 239

Query: 453 VDFCSEC 473
           +DF   C
Sbjct: 240 LDFLESC 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,132
Number of Sequences: 5004
Number of extensions: 69177
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)