Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP08_F_D07
(879 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA polym... 219 1e-56
CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein. 219 1e-56
BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DN... 219 1e-56
BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DN... 219 1e-56
BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DN... 219 1e-56
AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit ... 219 1e-56
AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subun... 219 1e-56
AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subun... 219 1e-56
AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subun... 219 1e-56
BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I poly... 67 7e-11
BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein. 67 7e-11
AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein. 67 7e-11
AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein. 67 7e-11
AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subuni... 67 7e-11
AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein. 64 8e-10
AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein. 43 0.002
AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein. 33 1.4
>J05448-1|AAA36586.1| 275|Homo sapiens protein ( Human RNA
polymerase subunit hRPB 33, mRNA. ).
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 81.4 bits (192), Expect = 4e-15
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +R T+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>CR542041-1|CAG46838.1| 275|Homo sapiens POLR2C protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>BC028157-1|AAH28157.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>BC003159-1|AAH03159.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>BC000409-1|AAH00409.1| 275|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide C, 33kDa protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>AJ224144-1|CAA11843.1| 275|Homo sapiens RNA polymerase subunit
protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 81.4 bits (192), Expect = 4e-15
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +R T+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>AJ224143-1|CAA11842.1| 275|Homo sapiens RNA polymerase II subunit
protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 81.4 bits (192), Expect = 4e-15
Identities = 35/66 (53%), Positives = 44/66 (66%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +R T+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>AF008443-1|AAC14355.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>AC004382-7|AAC24309.1| 275|Homo sapiens RNA polymerase II subunit
hRPB33 protein.
Length = 275
Score = 219 bits (534), Expect = 1e-56
Identities = 94/129 (72%), Positives = 118/129 (91%)
Frame = +3
Query: 183 MPYANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS 362
MPYANQP+V ITEL+DENVKF++E+T+L+VANS+RRVFIAE P +AIDWVQ++ANS+VL
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH 60
Query: 363 DEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADL 542
DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++QTRHVT+ DL
Sbjct: 61 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL 120
Query: 543 KSSDPRVVP 569
S+ PRV+P
Sbjct: 121 ISNSPRVIP 129
Score = 88.6 bits (210), Expect = 3e-17
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = +1
Query: 574 TSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
TSR+RD D DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNP
Sbjct: 131 TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Score = 85.4 bits (202), Expect = 2e-16
Identities = 36/66 (54%), Positives = 45/66 (68%)
Frame = +2
Query: 680 KKVLGKSMQNGIPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEPTELXEDQYEADFTXEAX 859
KK GK PTAGV+FEYDPDN +RHT+YPKP+EWPKSE +EL ED+ +A +
Sbjct: 166 KKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGK 225
Query: 860 PNXXFY 877
P +Y
Sbjct: 226 PERFYY 231
>BC008863-1|AAH08863.1| 346|Homo sapiens polymerase (RNA) I
polypeptide C, 30kDa protein.
Length = 346
Score = 67.3 bits (157), Expect = 7e-11
Identities = 32/100 (32%), Positives = 62/100 (62%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 387 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 506
GLIP+ +D + + R D + +++F L V+CT
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
>BC008118-1|AAH08118.1| 338|Homo sapiens POLR1C protein protein.
Length = 338
Score = 67.3 bits (157), Expect = 7e-11
Identities = 32/100 (32%), Positives = 62/100 (62%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 43 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 102
Query: 387 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 506
GLIP+ +D + + R D + +++F L V+CT
Sbjct: 103 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 139
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 187 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 219
>AL355802-12|CAI42629.1| 346|Homo sapiens RP3-337H4.4 protein.
Length = 346
Score = 67.3 bits (157), Expect = 7e-11
Identities = 32/100 (32%), Positives = 62/100 (62%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 387 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 506
GLIP+ +D + + R D + +++F L V+CT
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
>AL355802-11|CAI42628.1| 314|Homo sapiens RP3-337H4.4 protein.
Length = 314
Score = 67.3 bits (157), Expect = 7e-11
Identities = 32/100 (32%), Positives = 62/100 (62%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 387 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 506
GLIP+ +D + + R D + +++F L V+CT
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
>AF008442-1|AAC14354.1| 346|Homo sapiens RNA polymerase I subunit
hRPA39 protein.
Length = 346
Score = 67.3 bits (157), Expect = 7e-11
Identities = 32/100 (32%), Positives = 62/100 (62%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 51 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 110
Query: 387 GLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 506
GLIP+ +D + + R D + +++F L V+CT
Sbjct: 111 GLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 227
>AL355802-13|CAI42630.1| 139|Homo sapiens RP3-337H4.4 protein.
Length = 139
Score = 63.7 bits (148), Expect = 8e-10
Identities = 25/68 (36%), Positives = 48/68 (70%)
Frame = +3
Query: 207 VHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDEFLAHRI 386
V + + + +++F + + ++AN+ RR+ +AE PTMA++ V + N++++ DE LAHR+
Sbjct: 50 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 109
Query: 387 GLIPLISD 410
GLIP+ +D
Sbjct: 110 GLIPIHAD 117
>AL355802-16|CAI42632.1| 200|Homo sapiens RP3-337H4.4 protein.
Length = 200
Score = 42.7 bits (96), Expect = 0.002
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 717
D+ILI +LR GQE+ L + KG GK+HAK++P
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSP 99
>AL355802-15|CAI42633.1| 168|Homo sapiens RP3-337H4.4 protein.
Length = 168
Score = 33.1 bits (72), Expect = 1.4
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 619 DEILIIKLRKGQELKLRAYAKKGFGKEHAK 708
D+ILI +LR GQE+ L + KG GK+ A+
Sbjct: 67 DDILIAQLRPGQEIDLLMHCVKGIGKKVAR 96
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,359,210
Number of Sequences: 237096
Number of extensions: 2315020
Number of successful extensions: 8219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8219
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -